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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-22

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-22Imported
ORF Names:CELE_F53A3.3Imported, F53A3.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiF53A3.3a; CE10884; WBGene00004491; rps-22.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiO17218.
PaxDbiO17218.
PRIDEiO17218.

Expressioni

Gene expression databases

ExpressionAtlasiO17218. baseline.

Interactioni

Protein-protein interaction databases

DIPiDIP-25433N.
IntActiO17218. 1 interaction.
MINTiMINT-1072230.
STRINGi6239.F53A3.3a.4.

Structurei

3D structure databases

ProteinModelPortaliO17218.
SMRiO17218. Positions 2-130.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
GeneTreeiENSGT00390000003021.
HOGENOMiHOG000204097.
InParanoidiO17218.
KOiK02957.
OMAiTHEVTPA.
PhylomeDBiO17218.

Family and domain databases

InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O17218-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRMNVLADA LNAINNAEKR GKRQVLIRPA SKVIVRFLTV MMKHGYIGEF
60 70 80 90 100
EIVDDHRAGK IVVNLTGRLN KASVISPRLN IRLNDLEKYT NTLLPSRQFG
110 120 130
YLILTTSAGI MDHEEARRKH LGGKILGFFF
Length:130
Mass (Da):14,733
Last modified:January 1, 1998 - v1
Checksum:iAEBE8BE4B312E86E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CCD62154.1.
PIRiH88394.
RefSeqiNP_497481.1. NM_065080.5.
UniGeneiCel.8436.

Genome annotation databases

EnsemblMetazoaiF53A3.3a.1; F53A3.3a.1; WBGene00004491.
F53A3.3a.2; F53A3.3a.2; WBGene00004491.
F53A3.3a.3; F53A3.3a.3; WBGene00004491.
F53A3.3a.4; F53A3.3a.4; WBGene00004491.
GeneIDi175338.
KEGGicel:CELE_F53A3.3.
UCSCiF53A3.3a.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CCD62154.1.
PIRiH88394.
RefSeqiNP_497481.1. NM_065080.5.
UniGeneiCel.8436.

3D structure databases

ProteinModelPortaliO17218.
SMRiO17218. Positions 2-130.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25433N.
IntActiO17218. 1 interaction.
MINTiMINT-1072230.
STRINGi6239.F53A3.3a.4.

Proteomic databases

EPDiO17218.
PaxDbiO17218.
PRIDEiO17218.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF53A3.3a.1; F53A3.3a.1; WBGene00004491.
F53A3.3a.2; F53A3.3a.2; WBGene00004491.
F53A3.3a.3; F53A3.3a.3; WBGene00004491.
F53A3.3a.4; F53A3.3a.4; WBGene00004491.
GeneIDi175338.
KEGGicel:CELE_F53A3.3.
UCSCiF53A3.3a.2. c. elegans.

Organism-specific databases

CTDi175338.
WormBaseiF53A3.3a; CE10884; WBGene00004491; rps-22.

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
GeneTreeiENSGT00390000003021.
HOGENOMiHOG000204097.
InParanoidiO17218.
KOiK02957.
OMAiTHEVTPA.
PhylomeDBiO17218.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

ExpressionAtlasiO17218. baseline.

Family and domain databases

InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO17218_CAEEL
AccessioniPrimary (citable) accession number: O17218
Entry historyi
Integrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: July 6, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.