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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-22

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-22Imported
ORF Names:CELE_F53A3.3Imported, F53A3.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiF53A3.3a; CE10884; WBGene00004491; rps-22.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

EPDiO17218.
PaxDbiO17218.
PeptideAtlasiO17218.

Expressioni

Gene expression databases

BgeeiWBGene00004491.
ExpressionAtlasiO17218. baseline.

Interactioni

Protein-protein interaction databases

DIPiDIP-25433N.
IntActiO17218. 1 interactor.
MINTiMINT-1072230.
STRINGi6239.F53A3.3a.4.

Structurei

3D structure databases

ProteinModelPortaliO17218.
SMRiO17218.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
GeneTreeiENSGT00390000003021.
HOGENOMiHOG000204097.
InParanoidiO17218.
KOiK02957.
OMAiWEKQFLP.
OrthoDBiEOG091G0TSE.
PhylomeDBiO17218.

Family and domain databases

InterProiView protein in InterPro
IPR000630. Ribosomal_S8.
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiView protein in Pfam
PF00410. Ribosomal_S8. 1 hit.
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiView protein in PROSITE
PS00053. RIBOSOMAL_S8. 1 hit.

Sequencei

Sequence statusi: Complete.

O17218-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRMNVLADA LNAINNAEKR GKRQVLIRPA SKVIVRFLTV MMKHGYIGEF
60 70 80 90 100
EIVDDHRAGK IVVNLTGRLN KASVISPRLN IRLNDLEKYT NTLLPSRQFG
110 120 130
YLILTTSAGI MDHEEARRKH LGGKILGFFF
Length:130
Mass (Da):14,733
Last modified:January 1, 1998 - v1
Checksum:iAEBE8BE4B312E86E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CCD62154.1.
PIRiH88394.
RefSeqiNP_497481.1. NM_065080.5.
UniGeneiCel.8436.

Genome annotation databases

EnsemblMetazoaiF53A3.3a.1; F53A3.3a.1; WBGene00004491.
F53A3.3a.2; F53A3.3a.2; WBGene00004491.
F53A3.3a.3; F53A3.3a.3; WBGene00004491.
F53A3.3a.4; F53A3.3a.4; WBGene00004491.
GeneIDi175338.
KEGGicel:CELE_F53A3.3.
UCSCiF53A3.3a.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CCD62154.1.
PIRiH88394.
RefSeqiNP_497481.1. NM_065080.5.
UniGeneiCel.8436.

3D structure databases

ProteinModelPortaliO17218.
SMRiO17218.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25433N.
IntActiO17218. 1 interactor.
MINTiMINT-1072230.
STRINGi6239.F53A3.3a.4.

Proteomic databases

EPDiO17218.
PaxDbiO17218.
PeptideAtlasiO17218.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF53A3.3a.1; F53A3.3a.1; WBGene00004491.
F53A3.3a.2; F53A3.3a.2; WBGene00004491.
F53A3.3a.3; F53A3.3a.3; WBGene00004491.
F53A3.3a.4; F53A3.3a.4; WBGene00004491.
GeneIDi175338.
KEGGicel:CELE_F53A3.3.
UCSCiF53A3.3a.2. c. elegans.

Organism-specific databases

CTDi175338.
WormBaseiF53A3.3a; CE10884; WBGene00004491; rps-22.

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
GeneTreeiENSGT00390000003021.
HOGENOMiHOG000204097.
InParanoidiO17218.
KOiK02957.
OMAiWEKQFLP.
OrthoDBiEOG091G0TSE.
PhylomeDBiO17218.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

BgeeiWBGene00004491.
ExpressionAtlasiO17218. baseline.

Family and domain databases

InterProiView protein in InterPro
IPR000630. Ribosomal_S8.
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiView protein in Pfam
PF00410. Ribosomal_S8. 1 hit.
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiView protein in PROSITE
PS00053. RIBOSOMAL_S8. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO17218_CAEEL
AccessioniPrimary (citable) accession number: O17218
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: January 18, 2017
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.