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Protein
Submitted name:

Nuclear Hormone Receptor family

Gene

nhr-270

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi67 – 142Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorSAAS annotationImported
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclear Hormone Receptor familyImported
Gene namesi
Name:nhr-270Imported
ORF Names:CELE_R13D11.8Imported, R13D11.8Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiR13D11.8a ; CE39955 ; WBGene00020062 ; nhr-270

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

EPDiO17013
PaxDbiO17013

Expressioni

Gene expression databases

BgeeiWBGene00020062

Interactioni

Protein-protein interaction databases

IntActiO17013, 1 interactor
STRINGi6239.R13D11.8

Structurei

3D structure databases

ProteinModelPortaliO17013
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini67 – 142Nuclear receptorInterPro annotationAdd BLAST76
Domaini160 – 399NR LBDInterPro annotationAdd BLAST240

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.SAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575 Eukaryota
ENOG410XRZC LUCA
GeneTreeiENSGT00530000064753
HOGENOMiHOG000017606
InParanoidiO17013
OMAiCGDQVKS
OrthoDBiEOG091G0GHB
PhylomeDBiO17013

Family and domain databases

Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR035500 NHR_like_dom_sf
IPR000536 Nucl_hrmn_rcpt_lig-bd
IPR001723 Nuclear_hrmn_rcpt
IPR001628 Znf_hrmn_rcpt
IPR013088 Znf_NHR/GATA
PfamiView protein in Pfam
PF00104 Hormone_recep, 1 hit
PF00105 zf-C4, 1 hit
PRINTSiPR00398 STRDHORMONER
PR00047 STROIDFINGER
SMARTiView protein in SMART
SM00430 HOLI, 1 hit
SM00399 ZnF_C4, 1 hit
SUPFAMiSSF48508 SSF48508, 1 hit
PROSITEiView protein in PROSITE
PS51843 NR_LBD, 1 hit
PS51030 NUCLEAR_REC_DBD_2, 1 hit

Sequencei

Sequence statusi: Complete.

O17013-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPYEFAGGPY RPLCPLSKIS RRWNLNSRGG AIVPSSTSVH SLGHSISMLA
60 70 80 90 100
VMSPSTSKAP NLIAILTERC AVCGDQVKSD RLGCPACLGC ILFFRRSVLK
110 120 130 140 150
NASYKCGRKG ACPVVSEFRS TCRHCRFKKC FDVGMKASAV NTCIANPSPP
160 170 180 190 200
PYVDVPKDLL GPCVILQTRQ IEEHKEQSVK HVRRASASDV NKMLMWSFND
210 220 230 240 250
AVEWASDYEP FQLLPNELQK CVISEFGVAF FLIDQGFKSA RESKRGFWMF
260 270 280 290 300
QNGTFLHFDY FHGLANIDDT ADREKTKHHC EFVQYLEVTI KQQFQLLQID
310 320 330 340 350
EFELAAIKTL LLLSCSYPKP EIFAEFKGTM QKLKNKCFAE LMSYLTVKLP
360 370 380 390
ATHAERFGKL ILVMGEIRAA VKVLYNHTKV SDLFDPSKFN MFVRSFLLT
Length:399
Mass (Da):45,079
Last modified:April 4, 2006 - v2
Checksum:i9CC2D99FDAB4176A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA Translation: CCD71087.1
PIRiG88941
RefSeqiNP_503328.2, NM_070927.5
UniGeneiCel.27492

Genome annotation databases

EnsemblMetazoaiR13D11.8a; R13D11.8a; WBGene00020062
GeneIDi187867
KEGGicel:CELE_R13D11.8
UCSCiR13D11.8 c. elegans

Similar proteinsi

Entry informationi

Entry nameiO17013_CAEEL
AccessioniPrimary (citable) accession number: O17013
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: April 4, 2006
Last modified: May 23, 2018
This is version 146 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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