O15534 (PER1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 126.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Period circadian protein homolog 1 Short name=hPER1 Alternative name(s): Circadian clock protein PERIOD 1 Circadian pacemaker protein Rigui | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1290 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of the circadian clock mechanism which is essential for generating circadian rhythms. Negative element in the circadian transcriptional loop. Influences clock function by interacting with other circadian regulatory proteins and transporting them to the nucleus. Negatively regulates CLOCK|NPAS2-BMAL1|BMAL2-induced transactivation. Can bind heme By similarity. |
| Subunit structure | Homodimer By similarity. Component of the circadian core oscillator, which includes the CRY proteins, CLOCK or NPAS2, BMAL1 or BMAL2, CSNK1D and/or CSNK1E, TIMELESS, and the PER proteins. Interacts directly with TIMELESS, PER2, PER3 and, through a C-terminal domain, with CRY1 and CRY2. Interaction with CSNK1D or CSNK1E promotes nuclear location of PER proteins. Interacts with GPRASP1 By similarity. Binding to CSNK1G2 triggers proteasomal degradation. Ref.11 Ref.12 Ref.14 |
| Subcellular location | Nucleus By similarity. Cytoplasm By similarity. Note: Mainly nuclear. Nucleocytoplasmic shuttling is effected by interaction with other circadian core oscillator proteins and/or by phosphorylation. Retention of PER1 in the cytoplasm occurs through PER1-PER2 heterodimer formation or by interaction with CSNK1E and/or phosphorylation which appears to mask the PER1 nuclear localization signal. Also translocated to the nucleus by CRY1 or CRY2 By similarity. Ref.13 |
| Tissue specificity | Widely expressed. Found in heart, brain, placenta, lung, liver, skeletal muscle, pancreas, kidney, spleen, thymus, prostate, testis, ovary and small intestine. Highest level in skeletal muscle. Low level in kidney. Ref.2 Ref.10 Ref.13 |
| Induction | Serum-induced levels in fibroblasts show circadian oscillations. Maximum levels after 1 hour stimulation, minimum levels after 12 hours. Another peak is then observed after 20 hours. Protein levels show maximum levels at 6 hours, decrease to reach minimum levels at 20 hours, and increase again to reach a second peak after 26 hours. Levels then decrease slightly and then increase to maximum levels at 32 hours. Levels of phosphorylated form increase between 3 hours and 12 hours. Ref.13 |
| Post-translational modification | Phosphorylated on serine residues by CSNK1E. Also can be phosphorylated by the delta isoform. Phosphorylation by CSNK1 retains PER1 in the cytoplasm and leads to its ubiquitination and subsequent degradation. Ref.11 Ref.12 Ref.13 Ubiquitinated By similarity. |
| Sequence similarities | Contains 1 PAC (PAS-associated C-terminal) domain. Contains 2 PAS (PER-ARNT-SIM) domains. |
| Sequence caution | The sequence BAC06326.2 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform Rigui 4.7 (identifier: O15534-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform Rigui 3.0 (identifier: O15534-2) The sequence of this isoform is not available. | ||||||
| Isoform Rigui 6.6 (identifier: O15534-3) Also known as: Truncated; The sequence of this isoform is not available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1290 | 1290 | Period circadian protein homolog 1 | PRO_0000162627 | |||||
Regions | |||||||||
| Domain | 208 – 275 | 68 | PAS 1 | ||||||
| Domain | 348 – 414 | 67 | PAS 2 | ||||||
| Domain | 422 – 465 | 44 | PAC | ||||||
| Region | 596 – 815 | 220 | CSNK1E binding domain By similarity | ||||||
| Region | 1149 – 1290 | 142 | CRY binding domain By similarity | ||||||
| Motif | 486 – 498 | 13 | Nuclear export signal By similarity | ||||||
| Motif | 827 – 843 | 17 | Nuclear localization signal By similarity | ||||||
| Compositional bias | 49 – 129 | 81 | Ser-rich | ||||||
| Compositional bias | 653 – 656 | 4 | Poly-Ser | ||||||
| Compositional bias | 848 – 1013 | 166 | Pro-rich | ||||||
| Compositional bias | 1030 – 1104 | 75 | Ser-rich | ||||||
| Compositional bias | 1269 – 1273 | 5 | Poly-Glu | ||||||
| Compositional bias | 1276 – 1279 | 4 | Poly-Ser | ||||||
Amino acid modifications | |||||||||
| Modified residue | 704 | 1 | Phosphoserine Ref.17 Ref.19 | ||||||
| Modified residue | 815 | 1 | Phosphoserine Ref.17 Ref.18 | ||||||
| Modified residue | 979 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 980 | 1 | Phosphoserine Ref.15 | ||||||
Natural variations | |||||||||
| Natural variant | 696 | 1 | E → Q in a breast cancer sample; somatic mutation. Ref.20 | VAR_036038 | |||||
| Natural variant | 962 | 1 | A → P. Ref.1 Ref.2 Ref.3 Ref.4 Ref.5 Ref.8 Ref.9 Corresponds to variant rs2585405 [ dbSNP | Ensembl ]. | VAR_047899 | |||||
| Natural variant | 968 | 1 | R → H. Corresponds to variant rs3027193 [ dbSNP | Ensembl ]. | VAR_047900 | |||||
| Natural variant | 985 | 1 | N → S in a breast cancer sample; somatic mutation. Ref.20 | VAR_036039 | |||||
| Natural variant | 1060 | 1 | S → L in a colorectal cancer sample; somatic mutation. Ref.20 | VAR_036040 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Rigui, a putative mammalian ortholog of the Drosophila period gene." Sun Z.S., Albrecht U., Zhuchenko O., Bailey J., Eichele G., Lee C.C. Cell 90:1003-1011(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], ALTERNATIVE SPLICING, VARIANT PRO-962. Tissue: Heart. |
| [2] | "Circadian oscillation of a mammalian homologue of the Drosophila period gene." Tei H., Okamura H., Shigeyoshi Y., Fukuhara C., Ozawa R., Hirose M., Sakaki Y. Nature 389:512-516(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, VARIANT PRO-962. Tissue: Brain. |
| [3] | "The human Per1 gene: genomic organization and promoter analysis of the first human orthologue of the Drosophila period gene." Taruscio D., Zoraqi G.K., Falchi M., Iosi F., Paradisi S., Di Fiore B., Lavia P., Falbo V. Gene 253:161-170(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT PRO-962. |
| [4] | "The human and mouse Period1 genes: five well-conserved E-boxes additively contribute to the enhancement of mPer1 transcription." Hida A., Koike N., Hirose M., Hattori M., Sakaki Y., Tei H. Genomics 65:224-233(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT PRO-962. |
| [5] | "Characterization of cDNA clones in size-fractionated cDNA libraries from human brain." Seki N., Ohira M., Nagase T., Ishikawa K., Miyajima N., Nakajima D., Nomura N., Ohara O. DNA Res. 4:345-349(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PRO-962. Tissue: Brain. |
| [6] | Nagase T., Kikuno R., Ohara O. Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases Cited for: SEQUENCE REVISION. |
| [7] | "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage." Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L. Nusbaum C.Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT PRO-962. |
| [9] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PRO-962. |
| [10] | "Two period homologs: circadian expression and photic regulation in the suprachiasmatic nuclei." Shearman L.P., Zylka M.J., Weaver D.R., Kolakowski L.F. Jr., Reppert S.M. Neuron 19:1261-1269(1997) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [11] | "Phosphorylation and destabilization of human period I clock protein by human casein kinase I epsilon." Keesler G.A., Camacho F., Guo Y., Virshup D., Mondadori C., Yao Z. NeuroReport 11:951-955(2000) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION, INTERACTION WITH CSNK1E. |
| [12] | "Human casein kinase Idelta phosphorylation of human circadian clock proteins period 1 and 2." Camacho F., Cilio M., Guo Y., Virshup D.M., Patel K., Khorkova O., Styren S., Morse B., Yao Z., Keesler G.A. FEBS Lett. 489:159-165(2001) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION, INTERACTION WITH CSNK1D. |
| [13] | "Phosphorylation of clock protein PER1 regulates its circadian degradation in normal human fibroblasts." Miyazaki K., Nagase T., Mesaki M., Narukawa J., Ohara O., Ishida N. Biochem. J. 380:95-103(2004) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INDUCTION. |
| [14] | "SCFbeta-TRCP controls clock-dependent transcription via casein kinase 1-dependent degradation of the mammalian period-1 (Per1) protein." Shirogane T., Jin J., Ang X.L., Harper J.W. J. Biol. Chem. 280:26863-26872(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CSNK1G2. |
| [15] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-979 AND SER-980, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Embryonic kidney. |
| [17] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-704 AND SER-815, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [18] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-815, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [19] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-704, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [20] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] GLN-696; SER-985 AND LEU-1060. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF022991 mRNA. Translation: AAC51765.1. AB002107 mRNA. Translation: BAA22633.1. AF102137 Genomic DNA. Translation: AAF15544.1. AB030817 Genomic DNA. Translation: BAA94085.1. AB088477 mRNA. Translation: BAC06326.2. Different initiation. AC129492 Genomic DNA. No translation available. CH471108 Genomic DNA. Translation: EAW90090.1. CH471108 Genomic DNA. Translation: EAW90091.1. BC137346 mRNA. Translation: AAI37347.1. | ||||||||||||
| IPI | IPI00440484. | ||||||||||||
| PIR | T00018. | ||||||||||||
| RefSeq | NP_002607.2. NM_002616.2. | ||||||||||||
| UniGene | Hs.445534. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | O15534. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | O15534. 4 interactions. | ||||||||||||
| STRING | 9606.ENSP00000314420. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | O15534. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | O15534. | ||||||||||||
| PRIDE | O15534. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000317276; ENSP00000314420; ENSG00000179094. | ||||||||||||
| GeneID | 5187. | ||||||||||||
| KEGG | hsa:5187. | ||||||||||||
| UCSC | uc002gkd.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 5187. | ||||||||||||
| GeneCards | GC17M008043. | ||||||||||||
| H-InvDB | HIX0039072. | ||||||||||||
| HGNC | HGNC:8845. PER1. | ||||||||||||
| MIM | 602260. gene. | ||||||||||||
| neXtProt | NX_O15534. | ||||||||||||
| PharmGKB | PA33184. | ||||||||||||
| HUGE | Search... | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG253593. | ||||||||||||
| HOGENOM | HOG000231111. | ||||||||||||
| HOVERGEN | HBG008167. | ||||||||||||
| InParanoid | O15534. | ||||||||||||
| KO | K02633. | ||||||||||||
| OMA | ELGAVHS. | ||||||||||||
| OrthoDB | EOG4HMJ8R. | ||||||||||||
| PhylomeDB | O15534. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Pathway_Interaction_DB | circadianpathway. Circadian rhythm pathway. | ||||||||||||
| Reactome | REACT_24941. Circadian Clock. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | O15534. | ||||||||||||
| Bgee | O15534. | ||||||||||||
| CleanEx | HS_PER1. | ||||||||||||
| Genevestigator | O15534. | ||||||||||||
| GermOnline | ENSG00000179094. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR001610. PAC. IPR000014. PAS. IPR013655. PAS_fold_3. IPR022728. Period_circadian-like_C. [Graphical view] | ||||||||||||
| Pfam | PF08447. PAS_3. 1 hit. PF12114. Period_C. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00086. PAC. 1 hit. SM00091. PAS. 2 hits. [Graphical view] | ||||||||||||
| PROSITE | PS50113. PAC. False negative. PS50112. PAS. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | PER1. human. | ||||||||||||
| GenomeRNAi | 5187. | ||||||||||||
| NextBio | 20060. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | PER1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O15534 Secondary accession number(s): B2RPA8, D3DTR3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 17 Human chromosome 17: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
