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O15522

- NKX28_HUMAN

UniProt

O15522 - NKX28_HUMAN

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Protein
Homeobox protein Nkx-2.8
Gene
NKX2-8, NKX-2.8, NKX2G, NKX2H
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi84 – 14360Homeobox
Add
BLAST

GO - Molecular functioni

  1. double-stranded DNA binding Source: UniProtKB
  2. sequence-specific DNA binding Source: UniProtKB
  3. sequence-specific DNA binding transcription factor activity Source: UniProtKB

GO - Biological processi

  1. axonogenesis Source: Ensembl
  2. liver development Source: UniProtKB
  3. lung development Source: Ensembl
  4. negative regulation of epithelial cell proliferation Source: Ensembl
  5. transcription from RNA polymerase II promoter Source: UniProtKB
  6. transcription, DNA-templated Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein Nkx-2.8
Alternative name(s):
Homeobox protein NK-2 homolog H
Gene namesi
Name:NKX2-8
Synonyms:NKX-2.8, NKX2G, NKX2H
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 14

Organism-specific databases

HGNCiHGNC:16364. NKX2-8.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA38402.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 239239Homeobox protein Nkx-2.8
PRO_0000048943Add
BLAST

Proteomic databases

PaxDbiO15522.
PRIDEiO15522.

Expressioni

Gene expression databases

BgeeiO15522.
CleanExiHS_NKX2-8.
GenevestigatoriO15522.

Organism-specific databases

HPAiHPA062879.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000258829.

Structurei

3D structure databases

ProteinModelPortaliO15522.
SMRiO15522. Positions 83-143.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi182 – 1876Poly-Gly

Sequence similaritiesi

Belongs to the NK-2 homeobox family.

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiNOG243784.
HOGENOMiHOG000231923.
HOVERGENiHBG006689.
InParanoidiO15522.
KOiK09347.
OMAiERSHYPS.
OrthoDBiEOG769ZK0.
PhylomeDBiO15522.
TreeFamiTF351204.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O15522-1 [UniParc]FASTAAdd to Basket

« Hide

MATSGRLSFT VRSLLDLPEQ DAQHLPRREP EPRAPQPDPC AAWLDSERGH    50
YPSSDESSLE TSPPDSSQRP SARPASPGSD AEKRKKRRVL FSKAQTLELE 100
RRFRQQRYLS APEREQLASL LRLTPTQVKI WFQNHRYKLK RARAPGAAES 150
PDLAASAELH AAPGLLRRVV VPVLVRDGQP CGGGGGGEVG TAAAQEKCGA 200
PPAAACPLPG YPAFGPGSAL GLFPAYQHLA SPALVSWNW 239
Length:239
Mass (Da):25,866
Last modified:September 23, 2008 - v2
Checksum:iE227378CCD6E9D27
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti16 – 161D → A.
VAR_003753

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti16 – 161D → G in AAC71081. 1 Publication
Sequence conflicti16 – 161D → G in AAC71082. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF000295 mRNA. Translation: AAC71081.1.
AF000297, AF000296 Genomic DNA. Translation: AAC71082.1.
AK313537 mRNA. Translation: BAG36314.1.
BC041090 mRNA. Translation: AAH41090.1.
CCDSiCCDS9660.1.
RefSeqiNP_055175.2. NM_014360.2.
UniGeneiHs.234763.

Genome annotation databases

EnsembliENST00000258829; ENSP00000258829; ENSG00000136327.
GeneIDi26257.
KEGGihsa:26257.
UCSCiuc001wtx.3. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF000295 mRNA. Translation: AAC71081.1 .
AF000297 , AF000296 Genomic DNA. Translation: AAC71082.1 .
AK313537 mRNA. Translation: BAG36314.1 .
BC041090 mRNA. Translation: AAH41090.1 .
CCDSi CCDS9660.1.
RefSeqi NP_055175.2. NM_014360.2.
UniGenei Hs.234763.

3D structure databases

ProteinModelPortali O15522.
SMRi O15522. Positions 83-143.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9606.ENSP00000258829.

Proteomic databases

PaxDbi O15522.
PRIDEi O15522.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000258829 ; ENSP00000258829 ; ENSG00000136327 .
GeneIDi 26257.
KEGGi hsa:26257.
UCSCi uc001wtx.3. human.

Organism-specific databases

CTDi 26257.
GeneCardsi GC14M037049.
H-InvDB HIX0026629.
HGNCi HGNC:16364. NKX2-8.
HPAi HPA062879.
MIMi 603245. gene.
neXtProti NX_O15522.
PharmGKBi PA38402.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG243784.
HOGENOMi HOG000231923.
HOVERGENi HBG006689.
InParanoidi O15522.
KOi K09347.
OMAi ERSHYPS.
OrthoDBi EOG769ZK0.
PhylomeDBi O15522.
TreeFami TF351204.

Miscellaneous databases

GenomeRNAii 26257.
NextBioi 48495.
PROi O15522.
SOURCEi Search...

Gene expression databases

Bgeei O15522.
CleanExi HS_NKX2-8.
Genevestigatori O15522.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
[Graphical view ]
PRINTSi PR00024. HOMEOBOX.
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A novel nk-2-related transcription factor associated with human fetal liver and hepatocellular carcinoma."
    Apergis G.A., Crawford N., Ghosh D., Steppan C.M., Vorachek W.R., Wen P., Locker J.
    J. Biol. Chem. 273:2917-2925(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Tongue.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.

Entry informationi

Entry nameiNKX28_HUMAN
AccessioniPrimary (citable) accession number: O15522
Secondary accession number(s): Q8IUT7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: September 23, 2008
Last modified: July 9, 2014
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 14
    Human chromosome 14: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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