O15381 (NVL_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 109.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Nuclear valosin-containing protein-like Short name=NVLp Short name=Nuclear VCP-like protein | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 856 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
Ontologies
| Keywords | |
|---|---|
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat |
| Ligand | ATP-binding Nucleotide-binding |
| PTM | Phosphoprotein |
| Technical term | 3D-structure Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Cellular_component | aggresome Inferred from direct assay. Source: HPA cytoplasmInferred from direct assay. Source: HPA nucleolusInferred from direct assay. Source: HPA |
| Molecular_function | ATP binding Traceable author statement Ref.1. Source: ProtInc nucleoside-triphosphatase activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O15381-1) Also known as: NVLp.2; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O15381-2) Also known as: NVLp.1; The sequence of this isoform differs from the canonical sequence as follows: 1-106: Missing. | ||||||
| Isoform 3 (identifier: O15381-3) The sequence of this isoform differs from the canonical sequence as follows: 1-106: Missing. 115-205: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: O15381-4) The sequence of this isoform differs from the canonical sequence as follows: 1-216: Missing. 320-320: G → GAECSGMITAHCSFDFSGSNDPPASASQ | ||||||
| Isoform 5 (identifier: O15381-5) The sequence of this isoform differs from the canonical sequence as follows: 115-205: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 856 | 856 | Nuclear valosin-containing protein-like | PRO_0000084588 | |||||||||||||||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||||||||||||||||
| Nucleotide binding | 305 – 312 | 8 | ATP Potential | ||||||||||||||||||||||||||||||||||||||||||||||
| Nucleotide binding | 622 – 629 | 8 | ATP Probable | ||||||||||||||||||||||||||||||||||||||||||||||
| Motif | 49 – 52 | 4 | Nucleolar localization signal By similarity | ||||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 134 | 1 | Phosphoserine Ref.6 Ref.7 | ||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 138 | 1 | Phosphothreonine Ref.6 Ref.7 | ||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 211 | 1 | Phosphoserine Ref.7 Ref.10 | ||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 215 | 1 | Phosphoserine Ref.7 | ||||||||||||||||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 216 | 216 | Missing in isoform 4. | VSP_045334 | |||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 106 | 106 | Missing in isoform 2 and isoform 3. | VSP_007771 | |||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 115 – 205 | 91 | Missing in isoform 3 and isoform 5. | VSP_007772 | |||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 320 | 1 | G → GAECSGMITAHCSFDFSGSN DPPASASQ in isoform 4. | VSP_045335 | |||||||||||||||||||||||||||||||||||||||||||||
| Natural variant | 295 | 1 | V → I. Corresponds to variant rs12084919 [ dbSNP | Ensembl ]. | VAR_048109 | |||||||||||||||||||||||||||||||||||||||||||||
| Natural variant | 359 | 1 | C → G. Ref.1 | VAR_015890 | |||||||||||||||||||||||||||||||||||||||||||||
| Natural variant | 404 | 1 | V → I. Corresponds to variant rs34631151 [ dbSNP | Ensembl ]. | VAR_048110 | |||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 585 – 597 | 13 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 599 – 602 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 604 – 609 | 6 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 616 – 623 | 8 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 628 – 638 | 11 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 642 – 647 | 6 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 648 – 651 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 657 – 672 | 16 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 675 – 681 | 7 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 684 – 686 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 701 – 710 | 10 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 718 – 725 | 8 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 727 – 729 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 732 – 735 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 742 – 745 | 4 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 751 – 761 | 11 | |||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 762 – 769 | 8 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 776 – 780 | 5 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 784 – 786 | 3 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 790 – 808 | 19 | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 825 – 832 | 8 | |||||||||||||||||||||||||||||||||||||||||||||||
Sequences
| ||||||||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "NVL: a new member of the AAA family of ATPases localized to the nucleus." Germain-Lee E.L., Obie C., Valle D. Genomics 44:22-34(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), VARIANT GLY-359, PHOSPHORYLATION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY. Tissue: Kidney. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 4 AND 5). Tissue: Brain. |
| [3] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Eye. |
| [5] | "Functional proteomic analysis of human nucleolus." Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J. Mol. Biol. Cell 13:4100-4109(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-134 AND THR-138, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-134; THR-138; SER-211 AND SER-215, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [9] | "Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal." Fujiwara Y., Fujiwara K., Goda N., Iwaya N., Tenno T., Shirakawa M., Hiroaki H. J. Biol. Chem. 286:21732-21741(2011) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH NCL/NUCLEOLIN. |
| [10] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-211, MASS SPECTROMETRY. |
| [11] | "Human nuclear valosin containing protein like (NVL), C-terminal AAA-ATPase domain." Structural genomics consortium (SGC) Submitted (MAR-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 574-845 IN COMPLEX WITH PHOSPHATE. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | U68140 mRNA. Translation: AAB70457.1. U78772 mRNA. Translation: AAB70460.1. AK297396 mRNA. Translation: BAG59836.1. AK298244 mRNA. Translation: BAG60510.1. AC092809 Genomic DNA. No translation available. BC012105 mRNA. Translation: AAH12105.1. | ||||||||||||
| IPI | IPI00006197. IPI00183080. IPI00185801. | ||||||||||||
| RefSeq | NP_001230075.1. NM_001243146.1. NP_001230076.1. NM_001243147.1. NP_002524.2. NM_002533.3. NP_996671.1. NM_206840.2. | ||||||||||||
| UniGene | Hs.497867. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | O15381. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | O15381. 1 interaction. | ||||||||||||
| MINT | MINT-1423251. | ||||||||||||
| STRING | 9606.ENSP00000281701. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | O15381. | ||||||||||||
2D gel databases | |||||||||||||
| SWISS-2DPAGE | O15381. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | O15381. | ||||||||||||
| PRIDE | O15381. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 4931. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000281701; ENSP00000281701; ENSG00000143748. ENST00000340871; ENSP00000341362; ENSG00000143748. ENST00000391875; ENSP00000375747; ENSG00000143748. ENST00000469075; ENSP00000417826; ENSG00000143748. | ||||||||||||
| GeneID | 4931. | ||||||||||||
| KEGG | hsa:4931. | ||||||||||||
| UCSC | uc001hok.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 4931. | ||||||||||||
| GeneCards | GC01M224416. | ||||||||||||
| HGNC | HGNC:8070. NVL. | ||||||||||||
| HPA | HPA028207. | ||||||||||||
| MIM | 602426. gene. | ||||||||||||
| neXtProt | NX_O15381. | ||||||||||||
| PharmGKB | PA31857. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0464. | ||||||||||||
| HOGENOM | HOG000223225. | ||||||||||||
| HOVERGEN | HBG001226. | ||||||||||||
| InParanoid | O15381. | ||||||||||||
| KO | K14571. | ||||||||||||
| OMA | NDMTLKE. | ||||||||||||
| OrthoDB | EOG4ZPDTN. | ||||||||||||
| PhylomeDB | O15381. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | O15381. | ||||||||||||
| Bgee | O15381. | ||||||||||||
| CleanEx | HS_NVL. | ||||||||||||
| Genevestigator | O15381. | ||||||||||||
| GermOnline | ENSG00000143748. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR003593. AAA+_ATPase. IPR003959. ATPase_AAA_core. IPR003960. ATPase_AAA_CS. [Graphical view] | ||||||||||||
| Pfam | PF00004. AAA. 2 hits. [Graphical view] | ||||||||||||
| SMART | SM00382. AAA. 2 hits. [Graphical view] | ||||||||||||
| PROSITE | PS00674. AAA. 2 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | NVL. human. | ||||||||||||
| EvolutionaryTrace | O15381. | ||||||||||||
| GenomeRNAi | 4931. | ||||||||||||
| NextBio | 19001. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | NVL_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O15381 Secondary accession number(s): B4DMC4, B4DP98, Q96EM7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
