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Reviewed, UniProtKB/Swiss-Prot O15075 (DCLK1_HUMAN)

Last modified June 16, 2009. Version 92. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (7) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Serine/threonine-protein kinase DCLK1
    EC=2.7.11.1
Alternative name(s):
    Doublecortin-like and CAM kinase-like 1
      Short name=Doublecortin-like kinase 1
Gene names
Name: DCLK1
Synonyms: DCAMKL1, DCDC3A, KIAA0369
OrganismHomo sapiens (Human)
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length740 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Probable kinase that may be involved in a calcium-signaling pathway controlling neuronal migration in the developing brain. May also participate in functions of the mature nervous system.

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Tissue specificity

In fetal tissues, highly expressed in brain, detectable in lung and liver, but not in kidney. In adult tissues, expressed ubiquitously in the brain, detectable in the heart, liver, spleen, thymus, prostate, testis, ovary, small intestine and colon. The type A isoforms seem to be expressed predominantly in fetal brain whereas type B isoforms are expressed abundantly in both fetal and adult brain. Ref.7

Sequence similarities

Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.

Contains 2 doublecortin domains.

Contains 1 protein kinase domain.

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]

Note: Additional isoforms seem to exist. Type A (AS and AL) and type B (BS and BL) isoforms differ respectively by the presence or absence of the doublecortin domain. An alternative splicing occurring in 3' of the mRNA produces the long (L) instead of the short (S) isoforms.
Isoform 2 (identifier: O15075-1)

Also known as: AL;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 1 (identifier: O15075-2)

Also known as: AS;

The sequence of this isoform differs from the canonical sequence as follows:
     687-740: TTALDKERQV...ETVRSPNSPF → LDHGFTIKRS...RFSDEDATRM
Isoform 3 (identifier: O15075-3)

Also known as: BS;

The sequence of this isoform differs from the canonical sequence as follows:
     1-307: Missing.
     308-313: PASTSS → MLELIE
     687-740: TTALDKERQV...ETVRSPNSPF → LDHGFTIKRS...RFSDEDATRM
Isoform 4 (identifier: O15075-4)

Also known as: BL;

The sequence of this isoform differs from the canonical sequence as follows:
     1-307: Missing.
     308-313: PASTSS → MLELIE

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 740740Serine/threonine-protein kinase DCLK1
PRO_0000085919

Regions

Domain57 – 14387Doublecortin 1
Domain186 – 26984Doublecortin 2
Domain390 – 647258Protein kinase
Nucleotide binding396 – 4049ATP By similarity
Compositional bias288 – 34053Pro/Ser-rich
Compositional bias698 – 7014Poly-Arg

Sites

Active site5111Proton acceptor By similarity
Binding site4191ATP By similarity

Amino acid modifications

Modified residue3051Phosphoserine By similarity
Modified residue3071Phosphoserine By similarity
Modified residue3301Phosphoserine By similarity
Modified residue3321Phosphoserine By similarity
Modified residue3361Phosphothreonine By similarity
Modified residue3371Phosphoserine By similarity
Modified residue3641Phosphoserine By similarity
Modified residue3761Phosphoserine By similarity
Modified residue4931Phosphotyrosine By similarity
Modified residue5201Phosphotyrosine By similarity
Modified residue7221Phosphoserine By similarity
Modified residue7261Phosphoserine By similarity

Natural variations

Alternative sequence1 – 307307Missing in isoform 3 and isoform 4.
VSP_004905
Alternative sequence308 – 3136PASTSS → MLELIE in isoform 3 and isoform 4.
VSP_004906
Alternative sequence687 – 74054TTALD…PNSPF → LDHGFTIKRSGSLDYYQQPG MYWIRPPLLIRRGRFSDEDA TRM in isoform 1 and isoform 3.
VSP_004907
Natural variant291G → C in a gastric adenocarcinoma sample; somatic mutation. Ref.9
VAR_045673
Natural variant461T → M in a gastric adenocarcinoma sample; somatic mutation. Ref.9
VAR_045674
Natural variant931R → Q in a gastric adenocarcinoma sample; somatic mutation. Ref.9
VAR_045675
Natural variant2911S → F in a gastric adenocarcinoma sample; somatic mutation. Ref.9
VAR_045676
Natural variant2921R → H: dbSNP rs56185003. Ref.9
VAR_045677

Secondary structure

.................... 740
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform 2 (AL) [UniParc].

Last modified May 30, 2000. Version 2.
Checksum: D7B6D855099A315C

FASTA74082,224
        10         20         30         40         50         60 
MSFGRDMELE HFDERDKAQR YSRGSRVNGL PSPTHSAHCS FYRTRTLQTL SSEKKAKKVR 

        70         80         90        100        110        120 
FYRNGDRYFK GIVYAISPDR FRSFEALLAD LTRTLSDNVN LPQGVRTIYT IDGLKKISSL 

       130        140        150        160        170        180 
DQLVEGESYV CGSIEPFKKL EYTKNVNPNW SVNVKTTSAS RAVSSLATAK GSPSEVRENK 

       190        200        210        220        230        240 
DFIRPKLVTI IRSGVKPRKA VRILLNKKTA HSFEQVLTDI TDAIKLDSGV VKRLYTLDGK 

       250        260        270        280        290        300 
QVMCLQDFFG DDDIFIACGP EKFRYQDDFL LDESECRVVK STSYTKIASS SRRSTTKSPG 

       310        320        330        340        350        360 
PSRRSKSPAS TSSVNGTPGS QLSTPRSGKS PSPSPTSPGS LRKQRSSQHG GSSTSLASTK 

       370        380        390        400        410        420 
VCSSMDENDG PGEEVSEEGF QIPATITERY KVGRTIGDGN FAVVKECVER STAREYALKI 

       430        440        450        460        470        480 
IKKSKCRGKE HMIQNEVSIL RRVKHPNIVL LIEEMDVPTE LYLVMELVKG GDLFDAITST 

       490        500        510        520        530        540 
NKYTERDASG MLYNLASAIK YLHSLNIVHR DIKPENLLVY EHQDGSKSLK LGDFGLATIV 

       550        560        570        580        590        600 
DGPLYTVCGT PTYVAPEIIA ETGYGLKVDI WAAGVITYIL LCGFPPFRGS GDDQEVLFDQ 

       610        620        630        640        650        660 
ILMGQVDFPS PYWDNVSDSA KELITMMLLV DVDQRFSAVQ VLEHPWVNDD GLPENEHQLS 

       670        680        690        700        710        720 
VAGKIKKHFN TGPKPNSTAA GVSVIATTAL DKERQVFRRR RNQDVRSRYK AQPAPPELNS 

       730        740 
ESEDYSPSSS ETVRSPNSPF 

« Hide

Isoform 1 (AS).

Checksum: 32C685F6B308A6BD
Show »

FASTA72981,100
Isoform 3 (BS).

Checksum: 945DC91D48ECDB3A
Show »

FASTA42246,557
Isoform 4 (BL).

Checksum: 7EA1B5E565ADFC9A
Show »

FASTA43347,681

References

« Hide 'large scale' references
[1]"Expression and chromosomal localization of KIAA0369, a putative kinase structurally related to Doublecortin."
Omori Y., Suzuki M., Ozaki K., Harada Y., Nakamura Y., Takahashi E., Fujiwara T.
J. Hum. Genet. 43:169-177(1998) [PubMed: 9747029] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3 AND 4).
[2]"DCAMKL1, a brain-specific transmembrane protein on 13q12.3 that is similar to doublecortin (DCX)."
Sossey-Alaoui K., Srivastava A.K.
Genomics 56:121-126(1999) [PubMed: 10036192] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
Tissue: Fetal brain.
[3]"Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro."
Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
DNA Res. 4:141-150(1997) [PubMed: 9205841] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Tissue: Brain.
[4]"The DNA sequence and analysis of human chromosome 13."
Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. expand/collapse author list , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.
Nature 428:522-528(2004) [PubMed: 15057823] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[6]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
[7]"Genomic structure, chromosomal mapping, and expression pattern of human DCAMKL1 (KIAA0369), a homologue of DCX (XLIS)."
Matsumoto N., Pilz D.T., Ledbetter D.H.
Genomics 56:179-183(1999) [PubMed: 10051403] [Abstract]
Cited for: TISSUE SPECIFICITY.
[8]"Solution structure of the N-terminal DCX domain of human doublecortin-like kinase."
RIKEN structural genomics initiative (RSGI)
Submitted (NOV-2003) to the PDB data bank
Cited for: STRUCTURE BY NMR OF 51-156.
[9]"Patterns of somatic mutation in human cancer genomes."
Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. expand/collapse author list , Choudhury B., Clements J., Cole J., Dicks E., Forbes S., Gray K., Halliday K., Harrison R., Hills K., Hinton J., Jenkinson A., Jones D., Menzies A., Mironenko T., Perry J., Raine K., Richardson D., Shepherd R., Small A., Tofts C., Varian J., Webb T., West S., Widaa S., Yates A., Cahill D.P., Louis D.N., Goldstraw P., Nicholson A.G., Brasseur F., Looijenga L., Weber B.L., Chiew Y.-E., DeFazio A., Greaves M.F., Green A.R., Campbell P., Birney E., Easton D.F., Chenevix-Trench G., Tan M.-H., Khoo S.K., Teh B.T., Yuen S.T., Leung S.Y., Wooster R., Futreal P.A., Stratton M.R.
Nature 446:153-158(2007) [PubMed: 17344846] [Abstract]
Cited for: VARIANTS [LARGE SCALE ANALYSIS] CYS-29; MET-46; GLN-93; PHE-291 AND HIS-292.
+Additional computationally mapped references.

Cross-references

Sequence databases

AB002367 mRNA. Translation: BAA20824.2. Different initiation.
AL157760 expand/collapse EMBL AC list , AL157694, AL160392, AL390029 Genomic DNA. Translation: CAH70167.1.
AL157760 Genomic DNA. Translation: CAH70170.1.
AL157760 expand/collapse EMBL AC list , AL157694, AL160392, AL390029 Genomic DNA. Translation: CAH70168.1.
AL160392 expand/collapse EMBL AC list , AL157694, AL157760, AL390029 Genomic DNA. Translation: CAH70261.1.
AL160392 expand/collapse EMBL AC list , AL157694, AL157760, AL390029 Genomic DNA. Translation: CAH70262.1.
AL157694 expand/collapse EMBL AC list , AL157760, AL160392, AL390029 Genomic DNA. Translation: CAH70656.1.
AL157694 expand/collapse EMBL AC list , AL157760, AL160392, AL390029 Genomic DNA. Translation: CAH70657.1.
AL390029 expand/collapse EMBL AC list , AL157694, AL157760, AL160392 Genomic DNA. Translation: CAI15720.1.
AL390029 expand/collapse EMBL AC list , AL157694, AL157760, AL160392 Genomic DNA. Translation: CAI15721.1.
CH471075 Genomic DNA. Translation: EAX08550.1.
CH471075 Genomic DNA. Translation: EAX08551.1.
BC152456 mRNA. Translation: AAI52457.1.
IPIIPI00004560.
IPI00217247.
IPI00217249.
IPI00472852.
RefSeqNP_004725.1.
UniGeneHs.507755
Hs.593611

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1MFWX-ray1.60A49-154[»]
1MG4X-ray1.50A49-154[»]
1UF0NMR-A54-156[»]
ModBaseSearch...

PTM databases

PhosphoSiteO15075.

Proteomic databases

PRIDEO15075.

Genome annotation databases

EnsemblENSG00000133083. Homo sapiens. [Contig view]
GeneID9201.

Organism-specific databases

GeneCardsGC13M035244.
GC13M035245.
H-InvDBHIX0003164.
HIX0011234.
HGNCHGNC:2700. DCLK1.
MIM604742. gene.
HUGESearch...
GenAtlasSearch...

Phylogenomic databases

HOGENOMO15075.
HOVERGENO15075.
OMAO15075. TMMLLVN.

Enzyme and pathway databases

BRENDA2.7.11.1. 247.

Gene expression databases

ArrayExpressO15075.
BgeeO15075.
CleanExHS_DCLK1.
GermOnlineENSG00000133083. Homo sapiens.

Family and domain databases

InterProIPR003533. DCX.
IPR000719. Prot_kinase_core.
IPR017441. Protein_kinase_ATP_BS.
IPR017442. Se/Thr_pkinase-rel.
IPR008271. Ser_thr_pkin_AS.
IPR002290. Ser_thr_pkinase.
[Graphical view]
PfamPF03607. DCX. 2 hits.
PF00069. Pkinase. 1 hit.
[Graphical view]
ProDomPD000001. Prot_kinase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00537. DCX. 2 hits.
SM00220. S_TKc. 1 hit.
[Graphical view]
PROSITEPS50309. DC. 2 hits.
PS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio34489.
SOURCESearch...

Entry information

Entry nameDCLK1_HUMAN
AccessionPrimary (citable) accession number: O15075
Secondary accession number(s): Q5VZY8, Q5VZZ0, Q5VZZ1
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: June 16, 2009
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

Human chromosome 13

Human chromosome 13: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Human and mouse protein kinases

Human and mouse protein kinases: classification and index

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents