Reviewed,
UniProtKB/Swiss-Prot O15075 (DCLK1_HUMAN)
Last modified
June 16, 2009.
Version 92.
History...
Clusters with 100%,
90%,
50% identity |
Documents (7) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: Serine/threonine-protein kinase DCLK1 EC=2.7.11.1 Alternative name(s): Doublecortin-like and CAM kinase-like 1 Short name=Doublecortin-like kinase 1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 740 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Probable kinase that may be involved in a calcium-signaling pathway controlling neuronal migration in the developing brain. May also participate in functions of the mature nervous system. |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Tissue specificity | In fetal tissues, highly expressed in brain, detectable in lung and liver, but not in kidney. In adult tissues, expressed ubiquitously in the brain, detectable in the heart, liver, spleen, thymus, prostate, testis, ovary, small intestine and colon. The type A isoforms seem to be expressed predominantly in fetal brain whereas type B isoforms are expressed abundantly in both fetal and adult brain. Ref.7 |
| Sequence similarities | Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily. Contains 2 doublecortin domains. Contains 1 protein kinase domain. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. Type A (AS and AL) and type B (BS and BL) isoforms differ respectively by the presence or absence of the doublecortin domain. An alternative splicing occurring in 3' of the mRNA produces the long (L) instead of the short (S) isoforms. | ||||||
| Isoform 2 (identifier: O15075-1) Also known as: AL; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 (identifier: O15075-2) Also known as: AS; The sequence of this isoform differs from the canonical sequence as follows: 687-740: TTALDKERQV...ETVRSPNSPF → LDHGFTIKRS...RFSDEDATRM | ||||||
| Isoform 3 (identifier: O15075-3) Also known as: BS; The sequence of this isoform differs from the canonical sequence as follows: 1-307: Missing. 308-313: PASTSS → MLELIE 687-740: TTALDKERQV...ETVRSPNSPF → LDHGFTIKRS...RFSDEDATRM | ||||||
| Isoform 4 (identifier: O15075-4) Also known as: BL; The sequence of this isoform differs from the canonical sequence as follows: 1-307: Missing. 308-313: PASTSS → MLELIE |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 740 | 740 | Serine/threonine-protein kinase DCLK1 | PRO_0000085919 | ||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||
| Domain | 57 – 143 | 87 | Doublecortin 1 | |||||||||||||||||||||||||
| Domain | 186 – 269 | 84 | Doublecortin 2 | |||||||||||||||||||||||||
| Domain | 390 – 647 | 258 | Protein kinase | |||||||||||||||||||||||||
| Nucleotide binding | 396 – 404 | 9 | ATP By similarity | |||||||||||||||||||||||||
| Compositional bias | 288 – 340 | 53 | Pro/Ser-rich | |||||||||||||||||||||||||
| Compositional bias | 698 – 701 | 4 | Poly-Arg | |||||||||||||||||||||||||
Sites | ||||||||||||||||||||||||||||
| Active site | 511 | 1 | Proton acceptor By similarity | |||||||||||||||||||||||||
| Binding site | 419 | 1 | ATP By similarity | |||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||
| Modified residue | 305 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 307 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 330 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 332 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 336 | 1 | Phosphothreonine By similarity | |||||||||||||||||||||||||
| Modified residue | 337 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 364 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 376 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 493 | 1 | Phosphotyrosine By similarity | |||||||||||||||||||||||||
| Modified residue | 520 | 1 | Phosphotyrosine By similarity | |||||||||||||||||||||||||
| Modified residue | 722 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
| Modified residue | 726 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||
| Alternative sequence | 1 – 307 | 307 | Missing in isoform 3 and isoform 4. | VSP_004905 | ||||||||||||||||||||||||
| Alternative sequence | 308 – 313 | 6 | PASTSS → MLELIE in isoform 3 and isoform 4. | VSP_004906 | ||||||||||||||||||||||||
| Alternative sequence | 687 – 740 | 54 | TTALD…PNSPF → LDHGFTIKRSGSLDYYQQPG MYWIRPPLLIRRGRFSDEDA TRM in isoform 1 and isoform 3. | VSP_004907 | ||||||||||||||||||||||||
| Natural variant | 29 | 1 | G → C in a gastric adenocarcinoma sample; somatic mutation. Ref.9 | VAR_045673 | ||||||||||||||||||||||||
| Natural variant | 46 | 1 | T → M in a gastric adenocarcinoma sample; somatic mutation. Ref.9 | VAR_045674 | ||||||||||||||||||||||||
| Natural variant | 93 | 1 | R → Q in a gastric adenocarcinoma sample; somatic mutation. Ref.9 | VAR_045675 | ||||||||||||||||||||||||
| Natural variant | 291 | 1 | S → F in a gastric adenocarcinoma sample; somatic mutation. Ref.9 | VAR_045676 | ||||||||||||||||||||||||
| Natural variant | 292 | 1 | R → H: dbSNP rs56185003. Ref.9 | VAR_045677 | ||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||
| Helix | 53 – 55 | 3 | ||||||||||||||||||||||||||
| Beta strand | 56 – 63 | 8 | ||||||||||||||||||||||||||
| Beta strand | 72 – 77 | 6 | ||||||||||||||||||||||||||
| Helix | 84 – 95 | 12 | ||||||||||||||||||||||||||
| Beta strand | 98 – 101 | 4 | ||||||||||||||||||||||||||
| Beta strand | 107 – 110 | 4 | ||||||||||||||||||||||||||
| Helix | 120 – 122 | 3 | ||||||||||||||||||||||||||
| Beta strand | 128 – 135 | 8 | ||||||||||||||||||||||||||
| Turn | 142 – 145 | 4 | ||||||||||||||||||||||||||
| Helix | 148 – 151 | 4 | ||||||||||||||||||||||||||
Sequences
| ||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Expression and chromosomal localization of KIAA0369, a putative kinase structurally related to Doublecortin." Omori Y., Suzuki M., Ozaki K., Harada Y., Nakamura Y., Takahashi E., Fujiwara T. J. Hum. Genet. 43:169-177(1998) [PubMed: 9747029] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3 AND 4). |
| [2] | "DCAMKL1, a brain-specific transmembrane protein on 13q12.3 that is similar to doublecortin (DCX)." Sossey-Alaoui K., Srivastava A.K. Genomics 56:121-126(1999) [PubMed: 10036192] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2). Tissue: Fetal brain. |
| [3] | "Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro." Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 4:141-150(1997) [PubMed: 9205841] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [4] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed: 15057823] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [7] | "Genomic structure, chromosomal mapping, and expression pattern of human DCAMKL1 (KIAA0369), a homologue of DCX (XLIS)." Matsumoto N., Pilz D.T., Ledbetter D.H. Genomics 56:179-183(1999) [PubMed: 10051403] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [8] | "Solution structure of the N-terminal DCX domain of human doublecortin-like kinase." RIKEN structural genomics initiative (RSGI) Submitted (NOV-2003) to the PDB data bank Cited for: STRUCTURE BY NMR OF 51-156. |
| [9] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed: 17344846] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] CYS-29; MET-46; GLN-93; PHE-291 AND HIS-292. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB002367 mRNA. Translation: BAA20824.2. Different initiation. AL157760 AL390029 Genomic DNA. Translation: CAH70167.1. AL157760 Genomic DNA. Translation: CAH70170.1. AL157760 AL390029 Genomic DNA. Translation: CAH70168.1. AL160392 AL390029 Genomic DNA. Translation: CAH70261.1. AL160392 AL390029 Genomic DNA. Translation: CAH70262.1. AL157694 AL390029 Genomic DNA. Translation: CAH70656.1. AL157694 AL390029 Genomic DNA. Translation: CAH70657.1. AL390029 AL160392 Genomic DNA. Translation: CAI15720.1. AL390029 AL160392 Genomic DNA. Translation: CAI15721.1. CH471075 Genomic DNA. Translation: EAX08550.1. CH471075 Genomic DNA. Translation: EAX08551.1. BC152456 mRNA. Translation: AAI52457.1. | |||||||||||||||||||||||||
| IPI | IPI00004560. IPI00217247. IPI00217249. IPI00472852. | ||||||||||||||||||||||||
| RefSeq | NP_004725.1. | ||||||||||||||||||||||||
| UniGene | Hs.507755 Hs.593611 | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| |||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| PhosphoSite | O15075. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PRIDE | O15075. | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENSG00000133083. Homo sapiens. [Contig view] | ||||||||||||||||||||||||
| GeneID | 9201. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| GeneCards | GC13M035244. GC13M035245. | ||||||||||||||||||||||||
| H-InvDB | HIX0003164. HIX0011234. | ||||||||||||||||||||||||
| HGNC | HGNC:2700. DCLK1. | ||||||||||||||||||||||||
| MIM | 604742. gene. | ||||||||||||||||||||||||
| HUGE | Search... | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| HOGENOM | O15075. | ||||||||||||||||||||||||
| HOVERGEN | O15075. | ||||||||||||||||||||||||
| OMA | O15075. TMMLLVN. | ||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||
| BRENDA | 2.7.11.1. 247. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| ArrayExpress | O15075. | ||||||||||||||||||||||||
| Bgee | O15075. | ||||||||||||||||||||||||
| CleanEx | HS_DCLK1. | ||||||||||||||||||||||||
| GermOnline | ENSG00000133083. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| InterPro | IPR003533. DCX. IPR000719. Prot_kinase_core. IPR017441. Protein_kinase_ATP_BS. IPR017442. Se/Thr_pkinase-rel. IPR008271. Ser_thr_pkin_AS. IPR002290. Ser_thr_pkinase. [Graphical view] | ||||||||||||||||||||||||
| Pfam | PF03607. DCX. 2 hits. PF00069. Pkinase. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProDom | PD000001. Prot_kinase. 1 hit. [Graphical view] [Entries sharing at least one domain] | ||||||||||||||||||||||||
| SMART | SM00537. DCX. 2 hits. SM00220. S_TKc. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| PROSITE | PS50309. DC. 2 hits. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other Resources | |||||||||||||||||||||||||
| NextBio | 34489. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | DCLK1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O15075 Secondary accession number(s): Q5VZY8, Q5VZZ0, Q5VZZ1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| SIMILARITY comments Index of protein domains and families |

Clusters with


