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O15060

- ZBT39_HUMAN

UniProt

O15060 - ZBT39_HUMAN

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Protein

Zinc finger and BTB domain-containing protein 39

Gene
ZBTB39, KIAA0352
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in transcriptional regulation.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri372 – 39423C2H2-type 1Add
BLAST
Zinc fingeri400 – 42223C2H2-type 2; atypicalAdd
BLAST
Zinc fingeri480 – 50223C2H2-type 3; atypicalAdd
BLAST
Zinc fingeri508 – 53023C2H2-type 4Add
BLAST
Zinc fingeri538 – 56023C2H2-type 5Add
BLAST
Zinc fingeri605 – 62723C2H2-type 6Add
BLAST
Zinc fingeri633 – 65523C2H2-type 7Add
BLAST
Zinc fingeri661 – 68323C2H2-type 8; atypicalAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger and BTB domain-containing protein 39
Gene namesi
Name:ZBTB39
Synonyms:KIAA0352
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 12

Organism-specific databases

HGNCiHGNC:29014. ZBTB39.

Subcellular locationi

Nucleus Reviewed prediction

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142670543.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 712712Zinc finger and BTB domain-containing protein 39PRO_0000047744Add
BLAST

Proteomic databases

MaxQBiO15060.
PaxDbiO15060.
PRIDEiO15060.

PTM databases

PhosphoSiteiO15060.

Expressioni

Gene expression databases

BgeeiO15060.
CleanExiHS_ZBTB39.
GenevestigatoriO15060.

Organism-specific databases

HPAiHPA016866.
HPA020306.

Interactioni

Protein-protein interaction databases

BioGridi115211. 2 interactions.
STRINGi9606.ENSP00000300101.

Structurei

3D structure databases

ProteinModelPortaliO15060.
SMRiO15060. Positions 1-129, 341-692.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini30 – 9667BTBAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi200 – 2078Poly-Pro

Sequence similaritiesi

Contains 1 BTB (POZ) domain.

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri372 – 39423C2H2-type 1Add
BLAST
Zinc fingeri400 – 42223C2H2-type 2; atypicalAdd
BLAST
Zinc fingeri480 – 50223C2H2-type 3; atypicalAdd
BLAST
Zinc fingeri508 – 53023C2H2-type 4Add
BLAST
Zinc fingeri538 – 56023C2H2-type 5Add
BLAST
Zinc fingeri605 – 62723C2H2-type 6Add
BLAST
Zinc fingeri633 – 65523C2H2-type 7Add
BLAST
Zinc fingeri661 – 68323C2H2-type 8; atypicalAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiNOG272041.
HOGENOMiHOG000004862.
HOVERGENiHBG062784.
InParanoidiO15060.
KOiK10511.
OMAiFRGRSTI.
OrthoDBiEOG75QR3S.
PhylomeDBiO15060.
TreeFamiTF350825.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
3.30.710.10. 1 hit.
InterProiIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00651. BTB. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00225. BTB. 1 hit.
SM00355. ZnF_C2H2. 9 hits.
[Graphical view]
SUPFAMiSSF54695. SSF54695. 1 hit.
PROSITEiPS50097. BTB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O15060-1 [UniParc]FASTAAdd to Basket

« Hide

MGMRIKLQST NHPNNLLKEL NKCRLSETMC DVTIVVGSRS FPAHKAVLAC    50
AAGYFQNLFL NTGLDAARTY VVDFITPANF EKVLSFVYTS ELFTDLINVG 100
VIYEVAERLG MEDLLQACHS TFPDLESTAR AKPLTSTSES HSGTLSCPSA 150
EPAHPLGELR GGGDYLGADR NYVLPSDAGG SYKEEEKNVA SDANHSLHLP 200
QPPPPPPKTE DHDTPAPFTS IPSMMTQPLL GTVSTGIQTS TSSCQPYKVQ 250
SNGDFSKNSF LTPDNAVDIT TGTNSCLSNS EHSKDPGFGQ MDELQLEDLG 300
DDDLQFEDPA EDIGTTEEVI ELSDDSEDEL AFGENDNREN KAMPCQVCKK 350
VLEPNIQLIR QHARDHVDLL TGNCKVCETH FQDRNSRVTH VLSHIGIFLF 400
SCDMCETKFF TQWQLTLHRR DGIFENNIIV HPNDPLPGKL GLFSGAASPE 450
LKCAACGKVL AKDFHVVRGH ILDHLNLKGQ ACSVCDQRHL NLCSLMWHTL 500
SHLGISVFSC SVCANSFVDW HLLEKHMAVH QSLEDALFHC RLCSQSFKSE 550
AAYRYHVSQH KCNSGLDARP GFGLQHPALQ KRKLPAEEFL GEELALQGQP 600
GNSKYSCKVC GKRFAHTSEF NYHRRIHTGE KPYQCKVCHK FFRGRSTIKC 650
HLKTHSGALM YRCTVCGHYS STLNLMSKHV GVHKGSLPPD FTIEQTFMYI 700
IHSKEADKNP DS 712
Length:712
Mass (Da):79,001
Last modified:January 1, 1998 - v1
Checksum:iE09D2E2AEE35EF1A
GO

Sequence cautioni

The sequence BAA20809.2 differs from that shown. Reason: Erroneous initiation.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti689 – 6891P → A.
Corresponds to variant rs3741576 [ dbSNP | Ensembl ].
VAR_019985

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB002350 mRNA. Translation: BAA20809.2. Different initiation.
AK292468 mRNA. Translation: BAF85157.1.
CH471054 Genomic DNA. Translation: EAW96971.1.
BC140890 mRNA. Translation: AAI40891.1.
BC146867 mRNA. Translation: AAI46868.1.
BC152461 mRNA. Translation: AAI52462.1.
CCDSiCCDS31839.1.
RefSeqiNP_055645.1. NM_014830.2.
UniGeneiHs.591025.

Genome annotation databases

EnsembliENST00000300101; ENSP00000300101; ENSG00000166860.
GeneIDi9880.
KEGGihsa:9880.
UCSCiuc001sml.2. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB002350 mRNA. Translation: BAA20809.2 . Different initiation.
AK292468 mRNA. Translation: BAF85157.1 .
CH471054 Genomic DNA. Translation: EAW96971.1 .
BC140890 mRNA. Translation: AAI40891.1 .
BC146867 mRNA. Translation: AAI46868.1 .
BC152461 mRNA. Translation: AAI52462.1 .
CCDSi CCDS31839.1.
RefSeqi NP_055645.1. NM_014830.2.
UniGenei Hs.591025.

3D structure databases

ProteinModelPortali O15060.
SMRi O15060. Positions 1-129, 341-692.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 115211. 2 interactions.
STRINGi 9606.ENSP00000300101.

PTM databases

PhosphoSitei O15060.

Proteomic databases

MaxQBi O15060.
PaxDbi O15060.
PRIDEi O15060.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000300101 ; ENSP00000300101 ; ENSG00000166860 .
GeneIDi 9880.
KEGGi hsa:9880.
UCSCi uc001sml.2. human.

Organism-specific databases

CTDi 9880.
GeneCardsi GC12M057392.
HGNCi HGNC:29014. ZBTB39.
HPAi HPA016866.
HPA020306.
neXtProti NX_O15060.
PharmGKBi PA142670543.
HUGEi Search...
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG272041.
HOGENOMi HOG000004862.
HOVERGENi HBG062784.
InParanoidi O15060.
KOi K10511.
OMAi FRGRSTI.
OrthoDBi EOG75QR3S.
PhylomeDBi O15060.
TreeFami TF350825.

Miscellaneous databases

GenomeRNAii 9880.
NextBioi 37237.
PROi O15060.

Gene expression databases

Bgeei O15060.
CleanExi HS_ZBTB39.
Genevestigatori O15060.

Family and domain databases

Gene3Di 3.30.160.60. 2 hits.
3.30.710.10. 1 hit.
InterProi IPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00651. BTB. 1 hit.
PF00096. zf-C2H2. 1 hit.
[Graphical view ]
SMARTi SM00225. BTB. 1 hit.
SM00355. ZnF_C2H2. 9 hits.
[Graphical view ]
SUPFAMi SSF54695. SSF54695. 1 hit.
PROSITEi PS50097. BTB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 5 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro."
    Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
    DNA Res. 4:141-150(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Cerebellum.
  5. "3,400 new expressed sequence tags identify diversity of transcripts in human brain."
    Adams M.D., Kerlavage A.R., Fields C., Venter J.C.
    Nat. Genet. 4:256-267(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-82.
    Tissue: Brain.

Entry informationi

Entry nameiZBT39_HUMAN
AccessioniPrimary (citable) accession number: O15060
Secondary accession number(s): A7MD38, Q9UD98
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 18, 2001
Last sequence update: January 1, 1998
Last modified: July 9, 2014
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 12
    Human chromosome 12: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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