O14209 (YDT4_SCHPO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized aminotransferase C6B12.04c
EC=2.6.1.-

Gene names

ORF Names:

SPAC6B12.04c

Organism

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) [Reference proteome]

Taxonomic identifier

284812 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces › Schizosaccharomyces pombe

Protein attributes

Sequence length	421 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate Potential.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	Pyridoxal phosphate
Molecular function	Aminotransferase Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	biosynthetic process Inferred from electronic annotation. Source: InterPro
Cellular_component	cytosol Inferred from direct assay PubMed 16823372. Source: PomBase mitochondrion Inferred from sequence or structural similarity. Source: PomBase nucleus Inferred from direct assay PubMed 16823372. Source: PomBase
Molecular_function	pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro transaminase activity Inferred from sequence or structural similarity. Source: PomBase
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 421	421	Uncharacterized aminotransferase C6B12.04c		PRO_0000123931
Amino acid modifications
	Modified residue	249	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	O14209 [UniParc]. Last modified January 1, 1998. Version 1. Checksum: 7C2435D4E944C0CC	FASTA	421	47,570
	10 20 30 40 50 60 MAFRGIRPSN KVAASRPDVW TLVNQATAEC KVPPVSLSQG FFNYNPPKFV LDAAKKSIDE 70 80 90 100 110 120 VACNQYSHTR GRPSLRKALS EAYSPYFKRT LNPDTEIVVT AGANEGFFSV FAAFLNPGDE 130 140 150 160 170 180 VIVMEPFFDQ YISNITMNGG VPVYVPIIPP EEGSVKPVSA GAWKLDMNKL RNAITEKTKM 190 200 210 220 230 240 IVINTPHNPL GKIFSEEELN EIADLVLKHN LLVVSDEVYD RLSFVPFVRL ATLRPELFKH 250 260 270 280 290 300 VVTVGSGGKT FGCTGWRVGW LIGDESLIKY SAAAHTRICF AVNSPCQEAL AIAFGEAEKH 310 320 330 340 350 360 NYYEEYKSSY KKRFEILAKA FDQLEIPYTI PDGSYYTMAN FSKLKLPKDY PFPEEIANRP 370 380 390 400 410 420 RDFKLCYWIL KEIGVATIPP TEFYTDEDAP VAENYLRFAF CKTFETLEEA ARRLQKLKDY F

References

[1]

"The genome sequence of Schizosaccharomyces pombe." Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M. , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P. Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 972 / ATCC 24843.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU329670 Genomic DNA. Translation: CAB11066.1.
PIR	T39011.
RefSeq	NP_593759.1. NM_001019189.2.
3D structure databases
ProteinModelPortal	O14209.
ModBase	Search...
Protein-protein interaction databases
STRING	4896.SPAC6B12.04c-1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	SPAC6B12.04c.1; SPAC6B12.04c.1:pep; SPAC6B12.04c.
GeneID	2543228.
KEGG	spo:SPAC6B12.04c.
Organism-specific databases
PomBase	SPAC6B12.04c.
Phylogenomic databases
eggNOG	COG0436.
HOGENOM	HOG000223045.
KO	K14264.
OMA	EGWTHYT.
OrthoDB	EOG4WHCV4.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004839. Aminotransferase_I/II. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00155. Aminotran_1_2. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
ProtoNet	Search...
Other
NextBio	20804250.

Entry information

Entry name

YDT4_SCHPO

Accession

Primary (citable) accession number: O14209

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
Last sequence update:	January 1, 1998
Last modified:	April 3, 2013
This is version 87 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Fungal Protein Annotation Program