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Protein

Peroxisomal membrane protein pex13

Gene

pex13

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Component of the peroxisomal translocation machinery with pex14 and pex17.By similarity

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Peroxisomal membrane protein pex13
Alternative name(s):
Peroxin-13
Gene namesi
Name:pex13
ORF Names:SPAC3C7.10
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC3C7.10.
PomBaseiSPAC3C7.10. pex13.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei178 – 19821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • cytoplasm Source: PomBase
  • integral component of membrane Source: UniProtKB-KW
  • peroxisomal membrane Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Peroxisome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 288288Peroxisomal membrane protein pex13PRO_0000310479Add
BLAST

Proteomic databases

MaxQBiO14136.

Interactioni

Protein-protein interaction databases

BioGridi279481. 21 interactions.
MINTiMINT-4670819.

Structurei

3D structure databases

ProteinModelPortaliO14136.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini222 – 28867SH3PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the peroxin-13 family.Curated
Contains 1 SH3 domain.PROSITE-ProRule annotation

Keywords - Domaini

SH3 domain, Transmembrane, Transmembrane helix

Phylogenomic databases

InParanoidiO14136.
OMAiTHQFRTI.
OrthoDBiEOG7XDBSF.
PhylomeDBiO14136.

Family and domain databases

InterProiIPR007223. Peroxin-13_N.
IPR001452. SH3_domain.
[Graphical view]
PfamiPF04088. Peroxin-13_N. 1 hit.
PF00018. SH3_1. 1 hit.
[Graphical view]
PRINTSiPR00452. SH3DOMAIN.
SMARTiSM00326. SH3. 1 hit.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 1 hit.
PROSITEiPS50002. SH3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O14136-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METNQNEKGP SLPSYPAGGI MSVSNSNADT NQGVTQHPLA NRIVNPNYYN
60 70 80 90 100
MGFNPYSGFN SFIPSFNPFV PLETNLPGNG PISSLQVIES IVGAVGSIAQ
110 120 130 140 150
VLESTLMAAH MSYNTFVSVS ENLNKLKSSI GAIFGIVSLL SRLKRLVLKF
160 170 180 190 200
FKHSKIDEMN SQEYDVFEKE EGNHKNSIYS IVSSLAIILG LVGLPYAIIR
210 220 230 240 250
LFKNIYEKEK QIQQAKIRKK IDSLEFCKAD YEFMSRDPGV EMSLKKGDII
260 270 280
AILSKTDTQG NPCEWWQGRK RSGETGWFPS NYCSIISR
Length:288
Mass (Da):32,055
Last modified:January 1, 1998 - v1
Checksum:i992F93538CDE1E43
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16740.1.
PIRiT38696.
RefSeqiNP_593611.1. NM_001019042.2.

Genome annotation databases

EnsemblFungiiSPAC3C7.10.1; SPAC3C7.10.1:pep; SPAC3C7.10.
GeneIDi2543046.
KEGGispo:SPAC3C7.10.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16740.1.
PIRiT38696.
RefSeqiNP_593611.1. NM_001019042.2.

3D structure databases

ProteinModelPortaliO14136.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279481. 21 interactions.
MINTiMINT-4670819.

Proteomic databases

MaxQBiO14136.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC3C7.10.1; SPAC3C7.10.1:pep; SPAC3C7.10.
GeneIDi2543046.
KEGGispo:SPAC3C7.10.

Organism-specific databases

EuPathDBiFungiDB:SPAC3C7.10.
PomBaseiSPAC3C7.10. pex13.

Phylogenomic databases

InParanoidiO14136.
OMAiTHQFRTI.
OrthoDBiEOG7XDBSF.
PhylomeDBiO14136.

Miscellaneous databases

NextBioi20804076.
PROiO14136.

Family and domain databases

InterProiIPR007223. Peroxin-13_N.
IPR001452. SH3_domain.
[Graphical view]
PfamiPF04088. Peroxin-13_N. 1 hit.
PF00018. SH3_1. 1 hit.
[Graphical view]
PRINTSiPR00452. SH3DOMAIN.
SMARTiSM00326. SH3. 1 hit.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 1 hit.
PROSITEiPS50002. SH3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.

Entry informationi

Entry nameiPEX13_SCHPO
AccessioniPrimary (citable) accession number: O14136
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: January 1, 1998
Last modified: April 13, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.