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Protein

Uncharacterized WD repeat-containing protein C26H5.03

Gene

SPAC26H5.03

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • chromatin remodeling Source: PomBase
  • DNA replication-dependent nucleosome assembly Source: PomBase
  • heterochromatin maintenance Source: PomBase
  • homologous recombination-dependent replication fork processing Source: PomBase
  • nucleosome assembly Source: GO_Central
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C26H5.03
Gene namesi
ORF Names:SPAC26H5.03
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC26H5.03.
PomBaseiSPAC26H5.03.

Subcellular locationi

GO - Cellular componenti

  • CAF-1 complex Source: PomBase
  • cytosol Source: PomBase
  • nuclear replication fork Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 512512Uncharacterized WD repeat-containing protein C26H5.03PRO_0000316555Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei468 – 4681Phosphoserine1 Publication
Modified residuei470 – 4701Phosphoserine1 Publication
Modified residuei473 – 4731Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO13985.

PTM databases

iPTMnetiO13985.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi278548. 42 interactions.
DIPiDIP-61057N.
MINTiMINT-4669501.

Structurei

Secondary structure

1
512
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi508 – 5114Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2Z3FX-ray2.70I/J/K/L/M/N/O/P/Q/R/T493-512[»]
ProteinModelPortaliO13985.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO13985.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati16 – 5641WD 1Add
BLAST
Repeati65 – 10541WD 2Add
BLAST
Repeati126 – 16540WD 3Add
BLAST
Repeati168 – 20740WD 4Add
BLAST
Repeati373 – 41341WD 5Add
BLAST
Repeati417 – 45842WD 6Add
BLAST

Sequence similaritiesi

Contains 6 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

HOGENOMiHOG000183312.
InParanoidiO13985.
KOiK10751.
OMAiEIYDLSW.
OrthoDBiEOG7NCVC9.
PhylomeDBiO13985.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR024977. Apc4_WD40_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF12894. ANAPC4_WD40. 1 hit.
PF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O13985-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAEVLQIRW HYDANDDHTP IYSVDFQKNS LNKFATCGGD SKIRIWQLIT
60 70 80 90 100
SESSTKVEYL STLSRHTQAV NVVRFNPEGN ILATAGDEGT IMLWVPTNTP
110 120 130 140 150
ITTLADDAEE LALAKEYWKV KIVCRSMGSE IYDLCWSVDS NFLIAGAMDN
160 170 180 190 200
SLRLYDAHTG QLLTQKFDHS HYVQGVCWDP LNQYIVSESS DRSICLYEIQ
210 220 230 240 250
EEKKNPKKFQ LVLKSRICRI EYNVTKFELI SVTKPLNNDE SSGISEPIET
260 270 280 290 300
SNNNESPVSK HEALSSTANI VKDGSLERTE PPNSLNSKIS YSLYCNETLV
310 320 330 340 350
SFFRRPAFSP DGLLLVTPAG RLRPHGQPNF EVPYTAYIYT RGSITKQPVA
360 370 380 390 400
CLNGFKKPVI AVRFSPIHYE LNSFSNFSFT SVSFNLPYRM VFAVACQDAV
410 420 430 440 450
YIYDTQTCKP FYRAVNLHYS NLTDIAWNDD GNVLLMTSID GFCSVITFEP
460 470 480 490 500
GELGVKSQHK ISLPEKRSAS PSSIDDSQDN TAGGPATTTL IPRKVESSKV
510
SKKRIAPTPV YP
Length:512
Mass (Da):57,426
Last modified:January 1, 1999 - v2
Checksum:i6010733FED6CC87C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16189.1.
PIRiT38422.
RefSeqiNP_594450.1. NM_001019879.2.

Genome annotation databases

EnsemblFungiiSPAC26H5.03.1; SPAC26H5.03.1:pep; SPAC26H5.03.
GeneIDi2542071.
KEGGispo:SPAC26H5.03.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16189.1.
PIRiT38422.
RefSeqiNP_594450.1. NM_001019879.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2Z3FX-ray2.70I/J/K/L/M/N/O/P/Q/R/T493-512[»]
ProteinModelPortaliO13985.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi278548. 42 interactions.
DIPiDIP-61057N.
MINTiMINT-4669501.

PTM databases

iPTMnetiO13985.

Proteomic databases

MaxQBiO13985.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC26H5.03.1; SPAC26H5.03.1:pep; SPAC26H5.03.
GeneIDi2542071.
KEGGispo:SPAC26H5.03.

Organism-specific databases

EuPathDBiFungiDB:SPAC26H5.03.
PomBaseiSPAC26H5.03.

Phylogenomic databases

HOGENOMiHOG000183312.
InParanoidiO13985.
KOiK10751.
OMAiEIYDLSW.
OrthoDBiEOG7NCVC9.
PhylomeDBiO13985.

Miscellaneous databases

EvolutionaryTraceiO13985.
PROiO13985.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR024977. Apc4_WD40_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF12894. ANAPC4_WD40. 1 hit.
PF00400. WD40. 2 hits.
[Graphical view]
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-468; SER-470 AND SER-473, IDENTIFICATION BY MASS SPECTROMETRY.

Entry informationi

Entry nameiYEG3_SCHPO
AccessioniPrimary (citable) accession number: O13985
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: January 1, 1999
Last modified: July 6, 2016
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.