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Protein

Uncharacterized WD repeat-containing protein C25H1.08c

Gene

SPAC25H1.08c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C25H1.08c
Gene namesi
ORF Names:SPAC25H1.08c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC25H1.08c.
PomBaseiSPAC25H1.08c.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: PomBase
  • cytosol Source: PomBase
  • nucleus Source: PomBase
  • preribosome, large subunit precursor Source: PomBase
  • protein complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 399399Uncharacterized WD repeat-containing protein C25H1.08cPRO_0000316554Add
BLAST

Proteomic databases

MaxQBiO13982.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi279168. 4 interactions.
MINTiMINT-4669492.

Structurei

3D structure databases

ProteinModelPortaliO13982.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati59 – 9941WD 1Add
BLAST
Repeati102 – 14140WD 2Add
BLAST
Repeati144 – 18542WD 3Add
BLAST
Repeati187 – 22741WD 4Add
BLAST
Repeati241 – 28040WD 5Add
BLAST
Repeati283 – 32240WD 6Add
BLAST
Repeati324 – 36340WD 7Add
BLAST
Repeati366 – 39934WD 8Add
BLAST

Sequence similaritiesi

Contains 8 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

HOGENOMiHOG000261676.
InParanoidiO13982.
KOiK14818.
OMAiWKGHRGD.
OrthoDBiEOG092C0GQL.
PhylomeDBiO13982.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 4 hits.
[Graphical view]
SMARTiSM00320. WD40. 8 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O13982-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEEEENQEL YIAENEVEEV IKDNDKLMDQ GVTEDEAEQE QNDTMNNMVM
60 70 80 90 100
DMSVQGFFEH KDSVFSVSIN PVHSNLCASG GGDDLGYIWD ITTGEQICQL
110 120 130 140 150
TGHKDSIVAI DWSFDGTYIA TGGMDSQVRL WKSSTGFEFI TAFETVDEIV
160 170 180 190 200
WLSWHPKGLF LAAGCNDGSI WMWSLPSGKV VQVMYGHTAP VNAGKFIPPG
210 220 230 240 250
VGKRLATVDD SGTLIVWNPA TGAPECRMSS DDHRFDPGNE ETAAGWTSFD
260 270 280 290 300
CNAEGNVLFL GGSSGKVKVV NINSSHILAS LEAQTESVEA IALCTALPIC
310 320 330 340 350
ACASVDGTVA LYDSASLKFR KSLPHEQAVI DCKFLPNTPY LLTACADCVI
360 370 380 390
RKWDVRSGQL LGEYTGHQEP ILCMAITPDG KRVVTGSDDT ELLVFDCEH
Length:399
Mass (Da):43,432
Last modified:January 1, 1998 - v1
Checksum:iB536BD0A088D037F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB11604.1.
PIRiT38388.
RefSeqiNP_593812.1. NM_001019241.2.

Genome annotation databases

EnsemblFungiiSPAC25H1.08c.1; SPAC25H1.08c.1:pep; SPAC25H1.08c.
GeneIDi2542715.
KEGGispo:SPAC25H1.08c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB11604.1.
PIRiT38388.
RefSeqiNP_593812.1. NM_001019241.2.

3D structure databases

ProteinModelPortaliO13982.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279168. 4 interactions.
MINTiMINT-4669492.

Proteomic databases

MaxQBiO13982.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC25H1.08c.1; SPAC25H1.08c.1:pep; SPAC25H1.08c.
GeneIDi2542715.
KEGGispo:SPAC25H1.08c.

Organism-specific databases

EuPathDBiFungiDB:SPAC25H1.08c.
PomBaseiSPAC25H1.08c.

Phylogenomic databases

HOGENOMiHOG000261676.
InParanoidiO13982.
KOiK14818.
OMAiWKGHRGD.
OrthoDBiEOG092C0GQL.
PhylomeDBiO13982.

Miscellaneous databases

PROiO13982.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 4 hits.
[Graphical view]
SMARTiSM00320. WD40. 8 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEC8_SCHPO
AccessioniPrimary (citable) accession number: O13982
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: January 1, 1998
Last modified: September 7, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.