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Protein

Uncharacterized WD repeat-containing protein C25H1.08c

Gene

SPAC25H1.08c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C25H1.08c
Gene namesi
ORF Names:SPAC25H1.08c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC25H1.08c
PomBaseiSPAC25H1.08c

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003165541 – 399Uncharacterized WD repeat-containing protein C25H1.08cAdd BLAST399

Proteomic databases

MaxQBiO13982
PaxDbiO13982
PRIDEiO13982

PTM databases

iPTMnetiO13982

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi279168, 4 interactors
STRINGi4896.SPAC25H1.08c.1

Structurei

3D structure databases

ProteinModelPortaliO13982
SMRiO13982
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati59 – 99WD 1Add BLAST41
Repeati102 – 141WD 2Add BLAST40
Repeati144 – 185WD 3Add BLAST42
Repeati187 – 227WD 4Add BLAST41
Repeati241 – 280WD 5Add BLAST40
Repeati283 – 322WD 6Add BLAST40
Repeati324 – 363WD 7Add BLAST40
Repeati366 – 399WD 8Add BLAST34

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

HOGENOMiHOG000261676
InParanoidiO13982
KOiK14818
OMAiWQLPSGN
OrthoDBiEOG092C0GQL
PhylomeDBiO13982

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 4 hits
SMARTiView protein in SMART
SM00320 WD40, 8 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 5 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

O13982-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEEEENQEL YIAENEVEEV IKDNDKLMDQ GVTEDEAEQE QNDTMNNMVM
60 70 80 90 100
DMSVQGFFEH KDSVFSVSIN PVHSNLCASG GGDDLGYIWD ITTGEQICQL
110 120 130 140 150
TGHKDSIVAI DWSFDGTYIA TGGMDSQVRL WKSSTGFEFI TAFETVDEIV
160 170 180 190 200
WLSWHPKGLF LAAGCNDGSI WMWSLPSGKV VQVMYGHTAP VNAGKFIPPG
210 220 230 240 250
VGKRLATVDD SGTLIVWNPA TGAPECRMSS DDHRFDPGNE ETAAGWTSFD
260 270 280 290 300
CNAEGNVLFL GGSSGKVKVV NINSSHILAS LEAQTESVEA IALCTALPIC
310 320 330 340 350
ACASVDGTVA LYDSASLKFR KSLPHEQAVI DCKFLPNTPY LLTACADCVI
360 370 380 390
RKWDVRSGQL LGEYTGHQEP ILCMAITPDG KRVVTGSDDT ELLVFDCEH
Length:399
Mass (Da):43,432
Last modified:January 1, 1998 - v1
Checksum:iB536BD0A088D037F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB11604.1
PIRiT38388
RefSeqiNP_593812.1, NM_001019241.2

Genome annotation databases

EnsemblFungiiSPAC25H1.08c.1; SPAC25H1.08c.1:pep; SPAC25H1.08c
GeneIDi2542715
KEGGispo:SPAC25H1.08c

Similar proteinsi

Entry informationi

Entry nameiYEC8_SCHPO
AccessioniPrimary (citable) accession number: O13982
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: January 1, 1998
Last modified: April 25, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health