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Protein

RNA-binding protein rsd1

Gene

rsd1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: UniProtKB-KW
  • U1 snRNP binding Source: PomBase

GO - Biological processi

Keywordsi

Molecular functionRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein rsd1
Gene namesi
Name:rsd1
ORF Names:SPAC19G12.07c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC19G12.07c
PomBaseiSPAC19G12.07c rsd1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000818761 – 603RNA-binding protein rsd1Add BLAST603

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei174Phosphotyrosine1 Publication1
Modified residuei465Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO13845
PaxDbiO13845
PRIDEiO13845

PTM databases

iPTMnetiO13845

Interactioni

Protein-protein interaction databases

BioGridi279002, 12 interactors
STRINGi4896.SPAC19G12.07c.1

Structurei

3D structure databases

SMRiO13845
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini240 – 317RRM 1PROSITE-ProRule annotationAdd BLAST78
Domaini340 – 417RRM 2PROSITE-ProRule annotationAdd BLAST78
Domaini506 – 590RRM 3PROSITE-ProRule annotationAdd BLAST85

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000204008
InParanoidiO13845
KOiK13091
OMAiAKQLLMP
OrthoDBiEOG092C5H62

Family and domain databases

Gene3Di3.30.70.330, 3 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR029123 RBM39_linker
IPR006509 RBM39_SF
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF15519 RBM39linker, 1 hit
PF00076 RRM_1, 3 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SM00361 RRM_1, 2 hits
SUPFAMiSSF54928 SSF54928, 3 hits
TIGRFAMsiTIGR01622 SF-CC1, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 3 hits

Sequencei

Sequence statusi: Complete.

O13845-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQLDAEALAE APFRKQEVPQ NQENQQKASS SFHESSLTSS THSHPSNPPP
60 70 80 90 100
PPTRLHDRSF KPVSKNYESE GRLTPPPVSM GYRYARSSKQ SFQREDSGYN
110 120 130 140 150
DDVVTNSSSH RTPRHHRRSY SPRSDYGSRS PSPHSSVDSH QSRSPVRSRD
160 170 180 190 200
RDRSSRSSRS RHPSSRSRHR YDDYSRSPPY SSRHSRSRRR YEERSSRSSR
210 220 230 240 250
AHDYDYEDLR DDDRSHERKR SRSRPRERSS KLSEEERDRR TVFVSQLANR
260 270 280 290 300
LTSRELYDFF EQAGPVRDAQ IVRDKISGRS KGVAYVEFCH EDSVQAAIAL
310 320 330 340 350
SGKRLLGLPV IVQLTEAEKN RKAREAAELA RAASAEIPFH RLCVSNIHFN
360 370 380 390 400
LTDEDVKAIF EPFGDIEFVH LQRDDQNRSK GFGYIQYRNP ISARNALEKM
410 420 430 440 450
NGFDLAGRNM RVCLGNDKFT TETTSSMLKR FDETLARQER SQPSQRNGGS
460 470 480 490 500
STYESQDYRE AAPLSPTEEE SRPITRDELM KKLARSEDIS DNSKLVSEPE
510 520 530 540 550
PPIRSRCALL ENMFNPAEET SPNWVQELEQ DVKEECDEKY GKVVHIAVVP
560 570 580 590 600
NELGQIFVKF ENADFAEKAI TGLHQRWFGG RTIKASILPE TDYYFKFPNA

KTA
Length:603
Mass (Da):69,362
Last modified:March 21, 2012 - v2
Checksum:i10094A172F1956F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB10118.2
PIRiT37994
RefSeqiNP_594422.2, NM_001019851.2

Genome annotation databases

EnsemblFungiiSPAC19G12.07c.1; SPAC19G12.07c.1:pep; SPAC19G12.07c
GeneIDi2542545
KEGGispo:SPAC19G12.07c

Similar proteinsi

Entry informationi

Entry nameiRSD1_SCHPO
AccessioniPrimary (citable) accession number: O13845
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 24, 2006
Last sequence update: March 21, 2012
Last modified: March 28, 2018
This is version 117 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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