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Protein

RNA-binding protein rsd1

Gene

rsd1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • nucleotide binding Source: InterPro
  • RNA binding Source: UniProtKB-KW
  • U1 snRNP binding Source: PomBase

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein rsd1
Gene namesi
Name:rsd1
ORF Names:SPAC19G12.07c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC19G12.07c.
PomBaseiSPAC19G12.07c. rsd1.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: PomBase
  • spliceosomal complex Source: PomBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 603603RNA-binding protein rsd1PRO_0000081876Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei174 – 1741Phosphotyrosine1 Publication
Modified residuei465 – 4651Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO13845.

PTM databases

iPTMnetiO13845.

Interactioni

Protein-protein interaction databases

BioGridi279002. 12 interactions.
MINTiMINT-4668450.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini240 – 31778RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini340 – 41778RRM 2PROSITE-ProRule annotationAdd
BLAST
Domaini506 – 59085RRM 3PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 3 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000204008.
InParanoidiO13845.
KOiK13091.
OMAiENWIKEL.
OrthoDBiEOG706125.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR029123. RBM39_linker.
IPR006509. RBM39_SF.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
[Graphical view]
PfamiPF15519. RBM39linker. 1 hit.
PF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
SM00361. RRM_1. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01622. SF-CC1. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O13845-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQLDAEALAE APFRKQEVPQ NQENQQKASS SFHESSLTSS THSHPSNPPP
60 70 80 90 100
PPTRLHDRSF KPVSKNYESE GRLTPPPVSM GYRYARSSKQ SFQREDSGYN
110 120 130 140 150
DDVVTNSSSH RTPRHHRRSY SPRSDYGSRS PSPHSSVDSH QSRSPVRSRD
160 170 180 190 200
RDRSSRSSRS RHPSSRSRHR YDDYSRSPPY SSRHSRSRRR YEERSSRSSR
210 220 230 240 250
AHDYDYEDLR DDDRSHERKR SRSRPRERSS KLSEEERDRR TVFVSQLANR
260 270 280 290 300
LTSRELYDFF EQAGPVRDAQ IVRDKISGRS KGVAYVEFCH EDSVQAAIAL
310 320 330 340 350
SGKRLLGLPV IVQLTEAEKN RKAREAAELA RAASAEIPFH RLCVSNIHFN
360 370 380 390 400
LTDEDVKAIF EPFGDIEFVH LQRDDQNRSK GFGYIQYRNP ISARNALEKM
410 420 430 440 450
NGFDLAGRNM RVCLGNDKFT TETTSSMLKR FDETLARQER SQPSQRNGGS
460 470 480 490 500
STYESQDYRE AAPLSPTEEE SRPITRDELM KKLARSEDIS DNSKLVSEPE
510 520 530 540 550
PPIRSRCALL ENMFNPAEET SPNWVQELEQ DVKEECDEKY GKVVHIAVVP
560 570 580 590 600
NELGQIFVKF ENADFAEKAI TGLHQRWFGG RTIKASILPE TDYYFKFPNA

KTA
Length:603
Mass (Da):69,362
Last modified:March 21, 2012 - v2
Checksum:i10094A172F1956F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB10118.2.
PIRiT37994.
RefSeqiNP_594422.2. NM_001019851.2.

Genome annotation databases

EnsemblFungiiSPAC19G12.07c.1; SPAC19G12.07c.1:pep; SPAC19G12.07c.
GeneIDi2542545.
KEGGispo:SPAC19G12.07c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB10118.2.
PIRiT37994.
RefSeqiNP_594422.2. NM_001019851.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279002. 12 interactions.
MINTiMINT-4668450.

PTM databases

iPTMnetiO13845.

Proteomic databases

MaxQBiO13845.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC19G12.07c.1; SPAC19G12.07c.1:pep; SPAC19G12.07c.
GeneIDi2542545.
KEGGispo:SPAC19G12.07c.

Organism-specific databases

EuPathDBiFungiDB:SPAC19G12.07c.
PomBaseiSPAC19G12.07c. rsd1.

Phylogenomic databases

HOGENOMiHOG000204008.
InParanoidiO13845.
KOiK13091.
OMAiENWIKEL.
OrthoDBiEOG706125.

Miscellaneous databases

NextBioi20803597.
PROiO13845.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR029123. RBM39_linker.
IPR006509. RBM39_SF.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
[Graphical view]
PfamiPF15519. RBM39linker. 1 hit.
PF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
SM00361. RRM_1. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01622. SF-CC1. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "Comparative functional genomics of the fission yeasts."
    Rhind N., Chen Z., Yassour M., Thompson D.A., Haas B.J., Habib N., Wapinski I., Roy S., Lin M.F., Heiman D.I., Young S.K., Furuya K., Guo Y., Pidoux A., Chen H.M., Robbertse B., Goldberg J.M., Aoki K.
    , Bayne E.H., Berlin A.M., Desjardins C.A., Dobbs E., Dukaj L., Fan L., FitzGerald M.G., French C., Gujja S., Hansen K., Keifenheim D., Levin J.Z., Mosher R.A., Mueller C.A., Pfiffner J., Priest M., Russ C., Smialowska A., Swoboda P., Sykes S.M., Vaughn M., Vengrova S., Yoder R., Zeng Q., Allshire R., Baulcombe D., Birren B.W., Brown W., Ekwall K., Kellis M., Leatherwood J., Levin H., Margalit H., Martienssen R., Nieduszynski C.A., Spatafora J.W., Friedman N., Dalgaard J.Z., Baumann P., Niki H., Regev A., Nusbaum C.
    Science 332:930-936(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: REVISION OF GENE MODEL.
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-174 AND SER-465, IDENTIFICATION BY MASS SPECTROMETRY.

Entry informationi

Entry nameiRSD1_SCHPO
AccessioniPrimary (citable) accession number: O13845
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 24, 2006
Last sequence update: March 21, 2012
Last modified: May 11, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.