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Protein

Uncharacterized helicase C17H9.02

Gene

SPAC17H9.02

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi147 – 154ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

  • maturation of 5.8S rRNA Source: GO_Central
  • ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process Source: PomBase
  • nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription Source: PomBase
  • nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts Source: PomBase
  • regulation of heterochromatin domain assembly Source: PomBase
  • regulation of heterochromatin island assembly Source: PomBase
  • regulation of telomere maintenance via telomerase Source: PomBase
  • rRNA processing Source: PomBase
  • snoRNA processing Source: PomBase
  • tRNA catabolic process Source: PomBase

Keywordsi

Molecular functionHelicase, Hydrolase
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized helicase C17H9.02 (EC:3.6.4.-)
Gene namesi
ORF Names:SPAC17H9.02
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC17H9.02
PomBaseiSPAC17H9.02

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001020991 – 1030Uncharacterized helicase C17H9.02Add BLAST1030

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei41Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO13799
PaxDbiO13799
PRIDEiO13799

PTM databases

iPTMnetiO13799

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi278648, 271 interactors
IntActiO13799, 13 interactors
STRINGi4896.SPAC17H9.02.1

Structurei

3D structure databases

ProteinModelPortaliO13799
SMRiO13799
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini134 – 290Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST157
Domaini357 – 561Helicase C-terminalPROSITE-ProRule annotationAdd BLAST205

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi238 – 241DEVH box4

Sequence similaritiesi

Belongs to the helicase family. SKI2 subfamily.Curated

Phylogenomic databases

HOGENOMiHOG000163047
InParanoidiO13799
KOiK12598
OMAiCIHEVTV
OrthoDBiEOG092C0MRM
PhylomeDBiO13799

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR025696 rRNA_proc-arch_dom
IPR016438 Ski2-like
IPR012961 Ski2_C
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF08148 DSHCT, 1 hit
PF00271 Helicase_C, 1 hit
PF13234 rRNA_proc-arch, 1 hit
PIRSFiPIRSF005198 Antiviral_helicase_SKI2, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM01142 DSHCT, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 3 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit

Sequencei

Sequence statusi: Complete.

O13799-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSENSTDSKN FQFSEGSRES SNDELKVLLR DTETKEDEKS SFSNSEEESI
60 70 80 90 100
IENLSDSSVN KEYAKNSLKL SDAVSESKYL NPLLKDKRHD RSFALHKVVV
110 120 130 140 150
PDDYDYIPLN KHIPSDPPAK TYPFELDPFQ STAIKCVERM ESVLVSAHTS
160 170 180 190 200
AGKTVIAEYA IAQALKNRQR VIYTSPIKSL SNQKYRELLS EFGDVGLMTG
210 220 230 240 250
DVSINPSASC LIMTTEILRA MLYKNSEIMH EIAWVIFDEV HYMRDKDRGV
260 270 280 290 300
VWEETLILLP DAIRFIFLSA TLPNALQFAR WISEIHKQPC HVVYTDYRPT
310 320 330 340 350
PLQHFIYPQG ADGIYMLVDE KNKFKTENFK KVLEVLDHST RQENYSKSSK
360 370 380 390 400
KVKKSSSLER IINMVLSNRY DPIIVFCFSK KECEINAHQF GKLDLNDTEN
410 420 430 440 450
KELVTEIFDS AINQLSEEDR GLRQFEEMRS LLLRGIGIHH SGLLPILKEL
460 470 480 490 500
VEILFQEGLV RILFATETFS IGLNMPARTV LFTKAQKFSG NNFRWLTSGE
510 520 530 540 550
YMQMSGRAGR RGIDTKGLSI VILDQSIDEQ AARCLMNGQA DVLNSAFHLS
560 570 580 590 600
YGMILNLMRI EEISPEDILK KSFYQFQNME SLPLIKEELM QLKNEETSIN
610 620 630 640 650
IPNETAVKEF HDLKLQLEKY GEEIQKVMTH PDNCLPYLQS GRLIQIKLGG
660 670 680 690 700
IIFPWGVLVN VIKREFDPNT REQVAPHETY VLDVLLPISS NSMSNHKVNP
710 720 730 740 750
SILVPPRPNE TPLYEIVSVL LTAVCNISSI RIYMPRELNS NESKLRAYRR
760 770 780 790 800
VNEVIEEFKE IPYLDPLEHM HIESSTLSLS LRKLEILEPK LFDSPYYKDS
810 820 830 840 850
KHRAEYHEFR KKLNLRAQIK DISTKITNTE AIIQLRELKI RQRVLRRLGF
860 870 880 890 900
CTLENVIDIK GRVACEITSG DELLLVELIF QGFFNQMPPE EIAAALSCFV
910 920 930 940 950
YEDKSEVSTL NLKEPFKKMY LTIIEAAKRI ATVSLESKLQ FNESDYLHQF
960 970 980 990 1000
KPDIMEPVSL WINGASFQEI CIVSKLYEGS IVRTFRRLDE LLKQLEHAAI
1010 1020 1030
VLGNNELKEK SVLTEQKLHR DIIFSASLYL
Length:1,030
Mass (Da):118,461
Last modified:January 1, 1998 - v1
Checksum:i1E088BCE01118789
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB11211.1
PIRiT37868
RefSeqiNP_593572.1, NM_001019004.2

Genome annotation databases

EnsemblFungiiSPAC17H9.02.1; SPAC17H9.02.1:pep; SPAC17H9.02
GeneIDi2542173
KEGGispo:SPAC17H9.02

Similar proteinsi

Entry informationi

Entry nameiYE02_SCHPO
AccessioniPrimary (citable) accession number: O13799
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: January 1, 1998
Last modified: March 28, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health