Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized TLC domain-containing protein C17A2.02c

Gene

SPAC17A2.02c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized TLC domain-containing protein C17A2.02c
Gene namesi
ORF Names:SPAC17A2.02c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC17A2.02c.
PomBaseiSPAC17A2.02c.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei40 – 60HelicalSequence analysisAdd BLAST21
Transmembranei80 – 100HelicalSequence analysisAdd BLAST21
Transmembranei110 – 130HelicalSequence analysisAdd BLAST21
Transmembranei139 – 159HelicalSequence analysisAdd BLAST21
Transmembranei166 – 188HelicalSequence analysisAdd BLAST23
Transmembranei200 – 220HelicalSequence analysisAdd BLAST21
Transmembranei238 – 260HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003434341 – 290Uncharacterized TLC domain-containing protein C17A2.02cAdd BLAST290

Proteomic databases

MaxQBiO13752.
PRIDEiO13752.

Interactioni

Protein-protein interaction databases

MINTiMINT-4667632.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini74 – 271TLCPROSITE-ProRule annotationAdd BLAST198

Sequence similaritiesi

Contains 1 TLC (TRAM/LAG1/CLN8) domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000210105.
InParanoidiO13752.
OMAiYGGIMSY.
OrthoDBiEOG092C576N.
PhylomeDBiO13752.

Family and domain databases

InterProiIPR006634. TLC-dom.
[Graphical view]
PfamiPF03798. TRAM_LAG1_CLN8. 1 hit.
[Graphical view]
SMARTiSM00724. TLC. 1 hit.
[Graphical view]
PROSITEiPS50922. TLC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O13752-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSAVTPSDQ GLLPRGPIAL EEFVKPFCDR FGLTKLPRHM HVILLSALFY
60 70 80 90 100
QIINILSPVI SRHLSTHYAK LSKKTRLNWD AHVVSSVQSI VLICLGYTCL
110 120 130 140 150
KEVNAFPDKL FGYSVVAGDI YALTAGYFVW DLYITVRYVH ITGIGFVIHA
160 170 180 190 200
IAALFVITFS YRPYLMYYGP TYLSWELSTP FLNIHYFLDK TNRTGSKFQM
210 220 230 240 250
INGFILIVTF ICVRIAWGWF SAYSTAIEIL NHINVAPWAL SLFYLAANMS
260 270 280 290
LNCLNLFWVS KMIDAIRRRA HGEKKSTPLQ VTSEYAKKNI
Length:290
Mass (Da):33,043
Last modified:January 1, 1998 - v1
Checksum:i02F339F6A6CFB626
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16558.1.
PIRiT37803.
RefSeqiNP_594236.1. NM_001019659.2.

Genome annotation databases

EnsemblFungiiSPAC17A2.02c.1; SPAC17A2.02c.1:pep; SPAC17A2.02c.
GeneIDi2542376.
KEGGispo:SPAC17A2.02c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB16558.1.
PIRiT37803.
RefSeqiNP_594236.1. NM_001019659.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4667632.

Proteomic databases

MaxQBiO13752.
PRIDEiO13752.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC17A2.02c.1; SPAC17A2.02c.1:pep; SPAC17A2.02c.
GeneIDi2542376.
KEGGispo:SPAC17A2.02c.

Organism-specific databases

EuPathDBiFungiDB:SPAC17A2.02c.
PomBaseiSPAC17A2.02c.

Phylogenomic databases

HOGENOMiHOG000210105.
InParanoidiO13752.
OMAiYGGIMSY.
OrthoDBiEOG092C576N.
PhylomeDBiO13752.

Miscellaneous databases

PROiO13752.

Family and domain databases

InterProiIPR006634. TLC-dom.
[Graphical view]
PfamiPF03798. TRAM_LAG1_CLN8. 1 hit.
[Graphical view]
SMARTiSM00724. TLC. 1 hit.
[Graphical view]
PROSITEiPS50922. TLC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYF22_SCHPO
AccessioniPrimary (citable) accession number: O13752
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: January 1, 1998
Last modified: October 5, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.