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Protein

Transcription initiation factor TFIID subunit 7

Gene

taf7

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Also involved in the transport of mRNA from the nucleus to the cytoplasm.1 Publication

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processmRNA transport, Transcription, Transcription regulation, Transport

Enzyme and pathway databases

ReactomeiR-SPO-674695 RNA Polymerase II Pre-transcription Events
R-SPO-73776 RNA Polymerase II Promoter Escape
R-SPO-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-SPO-75953 RNA Polymerase II Transcription Initiation
R-SPO-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 7
Alternative name(s):
Transcription initiation factor TFIID 55 kDa subunit
Short name:
TAFII-55
Gene namesi
Name:taf7
Synonyms:ptr6
ORF Names:SPAC13F5.02c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi

Organism-specific databases

EuPathDBiFungiDB:SPAC13F5.02c
PomBaseiSPAC13F5.02c taf7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001188841 – 393Transcription initiation factor TFIID subunit 7Add BLAST393

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei308Phosphoserine1 Publication1
Modified residuei310Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO13701
PaxDbiO13701
PRIDEiO13701

PTM databases

iPTMnetiO13701
SwissPalmiO13701

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs).

GO - Molecular functioni

Protein-protein interaction databases

BioGridi279269, 6 interactors
IntActiO13701, 3 interactors
STRINGi4896.SPAC13F5.02c.1

Structurei

3D structure databases

SMRiO13701
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi25 – 30Poly-Pro6
Compositional biasi311 – 325Poly-GluAdd BLAST15

Sequence similaritiesi

Belongs to the TAF7 family.Curated

Phylogenomic databases

InParanoidiO13701
KOiK03132
OMAiVADICQM
OrthoDBiEOG092C3WW5
PhylomeDBiO13701

Family and domain databases

CDDicd08047 TAF7, 1 hit
InterProiView protein in InterPro
IPR037817 TAF7
IPR006751 TAFII55_prot_cons_reg
PANTHERiPTHR12228 PTHR12228, 1 hit
PfamiView protein in Pfam
PF04658 TAFII55_N, 1 hit
SMARTiView protein in SMART
SM01370 TAFII55_N, 1 hit

Sequencei

Sequence statusi: Complete.

O13701-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKLKIRAVQ PPPNDSRSST PATGPPPPIP KIKIKTREPK GPRLTKIRLK
60 70 80 90 100
RVREPGLGYD SEASDREEDT YIEEQIILRL PPGEDCEYVR KAIENREVGR
110 120 130 140 150
GADIWVKFKD QRRAVVHVNG HLYAAKLVDL PCIIESNKSF DKKVIFKAAD
160 170 180 190 200
ICQMLIATER IEHENSVLNT QLKQADYIYP HGLTTPMHWV RQKRFRKRVS
210 220 230 240 250
NRTIEAVENE VDRLLAMDER AESTSNELID QAQLARDSSI ALSEDTSFDG
260 270 280 290 300
MAGLRGTSID RDDQSVQTDM FDGMDEDDLA GQIEQGMLEL SQDTRESTAE
310 320 330 340 350
PRAAGEESAS EEEEEEEEEE EEENEADDET RENKRQNRLV REFISELESS
360 370 380 390
IQKRRKDADE ATNPILRNRF LADVNRMVTE LELKRTQLVD NPE
Length:393
Mass (Da):45,000
Last modified:January 1, 1998 - v1
Checksum:i58234FBA16998B5B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016928 Genomic DNA Translation: BAA32487.1
CU329670 Genomic DNA Translation: CAB11765.1
PIRiT43401
RefSeqiNP_593650.1, NM_001019082.2

Genome annotation databases

EnsemblFungiiSPAC13F5.02c.1; SPAC13F5.02c.1:pep; SPAC13F5.02c
GeneIDi2542822
KEGGispo:SPAC13F5.02c

Entry informationi

Entry nameiTAF7_SCHPO
AccessioniPrimary (citable) accession number: O13701
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 6, 2002
Last sequence update: January 1, 1998
Last modified: March 28, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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