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Protein

Transcription initiation factor TFIID subunit 7

Gene

taf7

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Also involved in the transport of mRNA from the nucleus to the cytoplasm.1 Publication

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

mRNA transport, Transcription, Transcription regulation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 7
Alternative name(s):
Transcription initiation factor TFIID 55 kDa subunit
Short name:
TAFII-55
Gene namesi
Name:taf7
Synonyms:ptr6
ORF Names:SPAC13F5.02c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC13F5.02c.
PomBaseiSPAC13F5.02c.

Subcellular locationi

  • Nucleus 1 Publication

GO - Cellular componenti

  • cytosol Source: PomBase
  • nucleus Source: PomBase
  • transcription factor TFIID complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 393393Transcription initiation factor TFIID subunit 7PRO_0000118884Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei308 – 3081Phosphoserine1 Publication
Modified residuei310 – 3101Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO13701.

PTM databases

iPTMnetiO13701.
SwissPalmiO13701.

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs).

Protein-protein interaction databases

BioGridi279269. 6 interactions.
IntActiO13701. 3 interactions.
MINTiMINT-4667272.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi25 – 306Poly-Pro
Compositional biasi311 – 32515Poly-GluAdd
BLAST

Sequence similaritiesi

Belongs to the TAF7 family.Curated

Phylogenomic databases

InParanoidiO13701.
KOiK03132.
OMAiRMPPGED.
OrthoDBiEOG70PC83.
PhylomeDBiO13701.

Family and domain databases

InterProiIPR006751. TAFII55_prot_cons_reg.
[Graphical view]
PfamiPF04658. TAFII55_N. 1 hit.
[Graphical view]
SMARTiSM01370. TAFII55_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O13701-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKLKIRAVQ PPPNDSRSST PATGPPPPIP KIKIKTREPK GPRLTKIRLK
60 70 80 90 100
RVREPGLGYD SEASDREEDT YIEEQIILRL PPGEDCEYVR KAIENREVGR
110 120 130 140 150
GADIWVKFKD QRRAVVHVNG HLYAAKLVDL PCIIESNKSF DKKVIFKAAD
160 170 180 190 200
ICQMLIATER IEHENSVLNT QLKQADYIYP HGLTTPMHWV RQKRFRKRVS
210 220 230 240 250
NRTIEAVENE VDRLLAMDER AESTSNELID QAQLARDSSI ALSEDTSFDG
260 270 280 290 300
MAGLRGTSID RDDQSVQTDM FDGMDEDDLA GQIEQGMLEL SQDTRESTAE
310 320 330 340 350
PRAAGEESAS EEEEEEEEEE EEENEADDET RENKRQNRLV REFISELESS
360 370 380 390
IQKRRKDADE ATNPILRNRF LADVNRMVTE LELKRTQLVD NPE
Length:393
Mass (Da):45,000
Last modified:January 1, 1998 - v1
Checksum:i58234FBA16998B5B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016928 Genomic DNA. Translation: BAA32487.1.
CU329670 Genomic DNA. Translation: CAB11765.1.
PIRiT43401.
RefSeqiNP_593650.1. NM_001019082.2.

Genome annotation databases

EnsemblFungiiSPAC13F5.02c.1; SPAC13F5.02c.1:pep; SPAC13F5.02c.
GeneIDi2542822.
KEGGispo:SPAC13F5.02c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB016928 Genomic DNA. Translation: BAA32487.1.
CU329670 Genomic DNA. Translation: CAB11765.1.
PIRiT43401.
RefSeqiNP_593650.1. NM_001019082.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279269. 6 interactions.
IntActiO13701. 3 interactions.
MINTiMINT-4667272.

PTM databases

iPTMnetiO13701.
SwissPalmiO13701.

Proteomic databases

MaxQBiO13701.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC13F5.02c.1; SPAC13F5.02c.1:pep; SPAC13F5.02c.
GeneIDi2542822.
KEGGispo:SPAC13F5.02c.

Organism-specific databases

EuPathDBiFungiDB:SPAC13F5.02c.
PomBaseiSPAC13F5.02c.

Phylogenomic databases

InParanoidiO13701.
KOiK03132.
OMAiRMPPGED.
OrthoDBiEOG70PC83.
PhylomeDBiO13701.

Miscellaneous databases

PROiO13701.

Family and domain databases

InterProiIPR006751. TAFII55_prot_cons_reg.
[Graphical view]
PfamiPF04658. TAFII55_N. 1 hit.
[Graphical view]
SMARTiSM01370. TAFII55_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of the ptr6(+) gene in fission yeast: a possible involvement of a transcriptional coactivator TAF in nucleocytoplasmic transport of mRNA."
    Shibuya T., Tsuneyoshi S., Azad A.K., Urushiyama S., Ohshima Y., Tani T.
    Genetics 152:869-880(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, SUBCELLULAR LOCATION.
    Strain: 972 / ATCC 24843.
  2. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-308 AND SER-310, IDENTIFICATION BY MASS SPECTROMETRY.

Entry informationi

Entry nameiTAF7_SCHPO
AccessioniPrimary (citable) accession number: O13701
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2002
Last sequence update: January 1, 1998
Last modified: June 8, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.