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Protein
Submitted name:

Protocadherin2 (pcdh2)

Gene
N/A
Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

CalciumSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Protocadherin2 (pcdh2)Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei691 – 714HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 32Sequence analysisAdd BLAST32
ChainiPRO_500415785333 – 932Sequence analysisAdd BLAST900

Structurei

3D structure databases

ProteinModelPortaliO13129.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 136CadherinInterPro annotationAdd BLAST107
Domaini137 – 244CadherinInterPro annotationAdd BLAST108
Domaini245 – 352CadherinInterPro annotationAdd BLAST108
Domaini353 – 457CadherinInterPro annotationAdd BLAST105
Domaini458 – 564CadherinInterPro annotationAdd BLAST107
Domaini571 – 683CadherinInterPro annotationAdd BLAST113

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

HOVERGENiHBG054878.
KOiK16497.
PhylomeDBiO13129.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR030728. PCDHGC3.
[Graphical view]
PANTHERiPTHR24028:SF70. PTHR24028:SF70. 1 hit.
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O13129-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGVAARSRG VTPGQVLSLC LLLLAASSGA SAAIRYAIPE EARRGSAVGN
60 70 80 90 100
VAADLALDPA RLSGRRPRVV SGGSKKYFAV DAASGSLLVS ERIDREELCG
110 120 130 140 150
ALSPCTLSFE IVLEKPLELY SGAVEIQDIN DNDPVFPSSQ ARLEISESVA
160 170 180 190 200
AGTRFPLESA QDPDVGINSL QTYQLSANTV VLDVQTRVDG SKYAELVLEK
210 220 230 240 250
ELDREEQREL HLVLTALDGG SPPRSAHVQI HIDVVDSNDN APVFNQSTYK
260 270 280 290 300
ASVRENTPSG TLVTKVSAYD LDDGPNGDIV YSFSSHTPAK VRELFTLDSD
310 320 330 340 350
IGELRVKGQL DYEETKLYEI YLQAKDKGAV PGVANCKVLV EVVDVNDNAP
360 370 380 390 400
EVTVTSVYSP VPEDAAPGTV VALLSVTDLD SRDNGLVNCF IPPGIPFTLS
410 420 430 440 450
STLKNYYTLK TKAALDREEA SEYNITVTAR DSGLPPLSAV KHILVQVSDV
460 470 480 490 500
NDNAPKSSQD SYDVYVLENN VPGISILNVS ATDPDLGRNG HLSYSLLQGD
510 520 530 540 550
TAVGHLFSIN RESGALHLLT SLDHEDQMEF SMMVQVQDGG SPPLATNLSV
560 570 580 590 600
NVFVTDLNDN APTVLYPLPN STSSYTDVVA PGTPVGHVVT KVVAVDADAG
610 620 630 640 650
YNAWISYTLL QATDPTLFSV GLHSGEIITA RQLREDEAPQ HTLVILLKDH
660 670 680 690 700
GEPPLSASAT VSISVAEKVR EALTDLTDVT PPHDPRRHMT FYLILAVILV
710 720 730 740 750
SAAFFITIVS VGIFKCYKWR QSKELFNSSR STLYRTPGPF HHVDAVRGGF
760 770 780 790 800
SPPNFYHQVY LTTDSRQSDL LCKKPITSSP LGSRQNTMRN GEPGLYHQMV
810 820 830 840 850
GTTSRLPTPL EQAQPNPDWR FSQTQRPGTS GSQNGEEGGA WPNNQFDTEM
860 870 880 890 900
LQAMILASAN EAADVNATLG GGTGTMGLSA RYGPQFTLQH VPDYRQNVYI
910 920 930
PGSTATLSNA AGKRDAKPSG GNKKKSGKKE KK
Length:932
Mass (Da):100,351
Last modified:July 1, 1997 - v1
Checksum:i94C521B3462B7540
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB004689 mRNA. Translation: BAA20457.1.
RefSeqiNP_999839.1. NM_214674.1.
UniGeneiGga.20154.
Gga.4289.

Genome annotation databases

GeneIDi408051.
KEGGigga:408051.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB004689 mRNA. Translation: BAA20457.1.
RefSeqiNP_999839.1. NM_214674.1.
UniGeneiGga.20154.
Gga.4289.

3D structure databases

ProteinModelPortaliO13129.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi408051.
KEGGigga:408051.

Organism-specific databases

CTDi5098.

Phylogenomic databases

HOVERGENiHBG054878.
KOiK16497.
PhylomeDBiO13129.

Family and domain databases

Gene3Di2.60.40.60. 6 hits.
InterProiIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR032455. Cadherin_C.
IPR031904. Cadherin_CBD.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR030728. PCDHGC3.
[Graphical view]
PANTHERiPTHR24028:SF70. PTHR24028:SF70. 1 hit.
PfamiPF00028. Cadherin. 5 hits.
PF08266. Cadherin_2. 1 hit.
PF16492. Cadherin_C_2. 1 hit.
PF15974. Cadherin_tail. 1 hit.
[Graphical view]
PRINTSiPR00205. CADHERIN.
SMARTiSM00112. CA. 6 hits.
[Graphical view]
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiPS00232. CADHERIN_1. 5 hits.
PS50268. CADHERIN_2. 6 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO13129_CHICK
AccessioniPrimary (citable) accession number: O13129
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: November 30, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.