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Protein

Gag polyprotein

Gene

gag

Organism
Simian T-lymphotropic virus 3
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiSimian T-lymphotropic virus 3Imported
Taxonomic identifieri39101 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeDeltaretrovirus

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinSAAS annotation, Virion

Structurei

3D structure databases

ProteinModelPortaliO12272.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini352 – 367CCHC-typeInterPro annotationAdd BLAST16

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.185.10. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR003139. D_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02228. Gag_p19. 1 hit.
PF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O12272-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKTYSSPAN PIPKAPKGLA IHHWLNFLQA AYRLQPGPSE FDFHQLRKFL
60 70 80 90 100
KLAIKTPVWL NPINYSVLAG LIPKNYPGRV HEIVAILIQE TPARETPPSA
110 120 130 140 150
PLADDPQKPP PYPEQVQTAP QCLPVLHPHG APAAHRPWQM KDLQAIKQDV
160 170 180 190 200
SSSAPGSLQF MQTVRLAVQQ FDPTAKDLHD LLQYLCSSLV ASYLHHQQLE
210 220 230 240 250
TLIAQAETQG ITGYNPLAGP LRVQANNPNQ QGLRREYQSL WLSAFSALPG
260 270 280 290 300
NTKDPTWAAI LQGPEEPFCS FVERLNVALD NGLPEGTPKD PILRSLAYSN
310 320 330 340 350
ANKECQKLLQ ARGQTNSPLG EMLRACQTWT PRDKSKILMI QPKKTPPPNQ
360 370 380 390 400
PCFRCGQAGH WSRDCKQPRP PPGPCPLCQD PAHWKRDCPQ LKADTKGNEN
410 420
LLLDLPCETS NARERKNSSG GED
Length:423
Mass (Da):46,934
Last modified:July 1, 1997 - v1
Checksum:i8692CF9F003F8153
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y07616 Genomic RNA. Translation: CAA68892.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y07616 Genomic RNA. Translation: CAA68892.1.

3D structure databases

ProteinModelPortaliO12272.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.185.10. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR003139. D_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02228. Gag_p19. 1 hit.
PF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO12272_9DELA
AccessioniPrimary (citable) accession number: O12272
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: October 5, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.