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O08807

- PRDX4_MOUSE

UniProt

O08807 - PRDX4_MOUSE

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Protein

Peroxiredoxin-4

Gene

Prdx4

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Probably involved in redox regulation of the cell. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation.

Catalytic activityi

2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei127 – 1271Cysteine sulfenic acid (-SOH) intermediateBy similarity

GO - Molecular functioni

  1. peroxidase activity Source: UniProtKB-KW
  2. peroxiredoxin activity Source: UniProtKB-EC
  3. protein homodimerization activity Source: MGI

GO - Biological processi

  1. 4-hydroxyproline metabolic process Source: MGI
  2. cell redox homeostasis Source: MGI
  3. extracellular matrix organization Source: MGI
  4. male gonad development Source: MGI
  5. negative regulation of male germ cell proliferation Source: MGI
  6. oxidation-reduction process Source: MGI
  7. protein maturation by protein folding Source: MGI
  8. reactive oxygen species metabolic process Source: MGI
  9. spermatogenesis Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Antioxidant, Oxidoreductase, Peroxidase

Protein family/group databases

PeroxiBasei4532. Mm2CysPrx04.

Names & Taxonomyi

Protein namesi
Recommended name:
Peroxiredoxin-4 (EC:1.11.1.15)
Alternative name(s):
Antioxidant enzyme AOE372
Peroxiredoxin IV
Short name:
Prx-IV
Thioredoxin peroxidase AO372
Thioredoxin-dependent peroxide reductase A0372
Gene namesi
Name:Prdx4
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:1859815. Prdx4.

Subcellular locationi

Cytoplasm By similarity. Secreted By similarity

GO - Cellular componenti

  1. cytoplasm Source: MGI
  2. cytosol Source: MGI
  3. endoplasmic reticulum Source: MGI
  4. extracellular space Source: Ensembl
  5. extracellular vesicular exosome Source: Ensembl
  6. mitochondrion Source: MGI
  7. nucleus Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4040By similarityAdd
BLAST
Chaini41 – 274234Peroxiredoxin-4PRO_0000135099Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi127 – 127Interchain (with C-248); in linked formBy similarity
Disulfide bondi248 – 248Interchain (with C-127); in linked formBy similarity

Keywords - PTMi

Disulfide bond

Proteomic databases

MaxQBiO08807.
PaxDbiO08807.
PRIDEiO08807.

2D gel databases

REPRODUCTION-2DPAGEO08807.

PTM databases

PhosphoSiteiO08807.

Expressioni

Gene expression databases

BgeeiO08807.
CleanExiMM_PRDX4.
ExpressionAtlasiO08807. baseline and differential.
GenevestigatoriO08807.

Interactioni

Subunit structurei

Homodimer or heterodimer with PRDX1; disulfide-linked, upon oxidation.

Protein-protein interaction databases

BioGridi207303. 2 interactions.
DIPiDIP-34137N.
IntActiO08807. 5 interactions.
MINTiMINT-1862981.
STRINGi10090.ENSMUSP00000026328.

Structurei

Secondary structure

1
274
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi92 – 976Combined sources
Beta strandi100 – 1056Combined sources
Helixi106 – 1094Combined sources
Beta strandi112 – 1187Combined sources
Beta strandi122 – 1265Combined sources
Helixi129 – 1368Combined sources
Helixi138 – 1436Combined sources
Beta strandi146 – 1549Combined sources
Helixi156 – 1638Combined sources
Helixi167 – 1693Combined sources
Beta strandi179 – 1813Combined sources
Helixi186 – 1905Combined sources
Turni196 – 1994Combined sources
Beta strandi204 – 2085Combined sources
Beta strandi212 – 2198Combined sources
Helixi226 – 24419Combined sources

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VWUX-ray3.30A/B/C/D/E/F/G/H/I/J41-274[»]
3VWVX-ray1.80A/B87-274[»]
3W8JX-ray2.10C/D244-263[»]
3WGXX-ray0.92C/D244-263[»]
ProteinModelPortaliO08807.
SMRiO08807. Positions 78-272.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini82 – 240159ThioredoxinPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the AhpC/TSA family.Curated
Contains 1 thioredoxin domain.PROSITE-ProRule annotation

Keywords - Domaini

Redox-active center, Signal

Phylogenomic databases

eggNOGiCOG0450.
GeneTreeiENSGT00390000004653.
HOGENOMiHOG000022343.
HOVERGENiHBG000286.
InParanoidiO08807.
KOiK03386.
OrthoDBiEOG7T1RCD.
PhylomeDBiO08807.
TreeFamiTF105181.

Family and domain databases

Gene3Di3.40.30.10. 1 hit.
InterProiIPR000866. AhpC/TSA.
IPR024706. Peroxiredoxin_AhpC-typ.
IPR019479. Peroxiredoxin_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF10417. 1-cysPrx_C. 1 hit.
PF00578. AhpC-TSA. 1 hit.
[Graphical view]
PIRSFiPIRSF000239. AHPC. 1 hit.
SUPFAMiSSF52833. SSF52833. 1 hit.
PROSITEiPS51352. THIOREDOXIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O08807-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEARSKLLDG TTASRRWTRK LVLLLPPLLL FLLRTESLQG LESDERFRTR
60 70 80 90 100
ENECHFYAGG QVYPGEASRV SVADHSLHLS KAKISKPAPY WEGTAVINGE
110 120 130 140 150
FKELKLTDYR GKYLVFFFYP LDFTFVCPTE IIAFGDRIEE FKSINTEVVA
160 170 180 190 200
CSVDSQFTHL AWINTPRRQG GLGPIRIPLL SDLNHQISKD YGVYLEDSGH
210 220 230 240 250
TLRGLFIIDD KGVLRQITLN DLPVGRSVDE TLRLVQAFQY TDKHGEVCPA
260 270
GWKPGSETII PDPAGKLKYF DKLN
Length:274
Mass (Da):31,053
Last modified:July 1, 1997 - v1
Checksum:i73DB5374EC46241C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U96746 mRNA. Translation: AAB57846.1.
AK005031 mRNA. Translation: BAB23758.1.
AK146402 mRNA. Translation: BAE27143.1.
AK152255 mRNA. Translation: BAE31074.1.
BX005263 Genomic DNA. Translation: CAM23139.1.
BC003349 mRNA. Translation: AAH03349.1.
BC019578 mRNA. Translation: AAH19578.1.
CCDSiCCDS30496.1.
RefSeqiNP_058044.1. NM_016764.4.
UniGeneiMm.247542.

Genome annotation databases

EnsembliENSMUST00000026328; ENSMUSP00000026328; ENSMUSG00000025289.
GeneIDi53381.
KEGGimmu:53381.
UCSCiuc009uru.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U96746 mRNA. Translation: AAB57846.1 .
AK005031 mRNA. Translation: BAB23758.1 .
AK146402 mRNA. Translation: BAE27143.1 .
AK152255 mRNA. Translation: BAE31074.1 .
BX005263 Genomic DNA. Translation: CAM23139.1 .
BC003349 mRNA. Translation: AAH03349.1 .
BC019578 mRNA. Translation: AAH19578.1 .
CCDSi CCDS30496.1.
RefSeqi NP_058044.1. NM_016764.4.
UniGenei Mm.247542.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3VWU X-ray 3.30 A/B/C/D/E/F/G/H/I/J 41-274 [» ]
3VWV X-ray 1.80 A/B 87-274 [» ]
3W8J X-ray 2.10 C/D 244-263 [» ]
3WGX X-ray 0.92 C/D 244-263 [» ]
ProteinModelPortali O08807.
SMRi O08807. Positions 78-272.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 207303. 2 interactions.
DIPi DIP-34137N.
IntActi O08807. 5 interactions.
MINTi MINT-1862981.
STRINGi 10090.ENSMUSP00000026328.

Protein family/group databases

PeroxiBasei 4532. Mm2CysPrx04.

PTM databases

PhosphoSitei O08807.

2D gel databases

REPRODUCTION-2DPAGE O08807.

Proteomic databases

MaxQBi O08807.
PaxDbi O08807.
PRIDEi O08807.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000026328 ; ENSMUSP00000026328 ; ENSMUSG00000025289 .
GeneIDi 53381.
KEGGi mmu:53381.
UCSCi uc009uru.1. mouse.

Organism-specific databases

CTDi 10549.
MGIi MGI:1859815. Prdx4.

Phylogenomic databases

eggNOGi COG0450.
GeneTreei ENSGT00390000004653.
HOGENOMi HOG000022343.
HOVERGENi HBG000286.
InParanoidi O08807.
KOi K03386.
OrthoDBi EOG7T1RCD.
PhylomeDBi O08807.
TreeFami TF105181.

Miscellaneous databases

NextBioi 310209.
PROi O08807.
SOURCEi Search...

Gene expression databases

Bgeei O08807.
CleanExi MM_PRDX4.
ExpressionAtlasi O08807. baseline and differential.
Genevestigatori O08807.

Family and domain databases

Gene3Di 3.40.30.10. 1 hit.
InterProi IPR000866. AhpC/TSA.
IPR024706. Peroxiredoxin_AhpC-typ.
IPR019479. Peroxiredoxin_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view ]
Pfami PF10417. 1-cysPrx_C. 1 hit.
PF00578. AhpC-TSA. 1 hit.
[Graphical view ]
PIRSFi PIRSF000239. AHPC. 1 hit.
SUPFAMi SSF52833. SSF52833. 1 hit.
PROSITEi PS51352. THIOREDOXIN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of human and mouse peroxiredoxin IV: evidence for inhibition by Prx-IV of epidermal growth factor- and p53-induced reactive oxygen species."
    Wong C.M., Chun A.C., Kok K.H., Zhou Y., Fung P.C., Kung H.F., Jeang K.-T., Jin D.-Y.
    Antioxid. Redox Signal. 2:507-518(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: C57BL/6J.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and DBA/2.
    Tissue: Bone marrow and Liver.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NMRI.
    Tissue: Mammary gland and Mammary tumor.
  5. Lubec G., Kang S.U., Yang J.W., Zigmond M.
    Submitted (JUL-2007) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 190-203 AND 216-226.
    Strain: C57BL/6.
    Tissue: Brain.

Entry informationi

Entry nameiPRDX4_MOUSE
AccessioniPrimary (citable) accession number: O08807
Secondary accession number(s): B1AZS7, Q3U8E4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 1, 1997
Last modified: October 29, 2014
This is version 135 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

The active site is the redox-active Cys-127 oxidized to Cys-SOH. Cys-SOH rapidly reacts with Cys-248-SH of the other subunit to form an intermolecular disulfide with a concomitant homodimer formation. The enzyme may be subsequently regenerated by reduction of the disulfide by thioredoxin (By similarity).By similarity
Irreversibly inactivated by overoxidation of Cys-127 (to Cys-SO3H) upon oxidative stress.By similarity

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3