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O08779 (O08779_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
CD44 protein EMBL AAB54002.1
Gene names
Name:Cd44 RGD 2307
Synonyms:CD44 EMBL AAB54002.1
OrganismRattus norvegicus (Rat) EMBL AAB54002.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length780 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   PTMDisulfide bond SAAS SAAS000538
Gene Ontology (GO)
   Biological_processcell adhesion

Inferred from electronic annotation. Source: InterPro

   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functionhyaluronic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
O08779 [UniParc].

Last modified July 1, 1997. Version 1.
Checksum: CC4D35AB1EA7377C

FASTA78085,918
        10         20         30         40         50         60 
MDKVWWHTAW GLLCLLQLSL AQQQIDLNIT CRYAGVFHVE KNGRYSISRT EAADLCEAFN 

        70         80         90        100        110        120 
TTLPTMAQME LALRKGFETC RYGFIEGHVV IPRIHPNAIC AANNTGVYIL LASNTSHYDT 

       130        140        150        160        170        180 
YCFNASAPLE EDCTSVTDLP NSFDGPVTIT IVNRDGTRYS KKGEYRTHQE DIDASNIIDE 

       190        200        210        220        230        240 
DVSSGSTIEK STPEGYILHT DLPTSQPTGD RDDAFFIGST LATIASTVYS KSHATAQKQN 

       250        260        270        280        290        300 
NWIWSWFGNS QSTTQTQDSP TTTATTALMT TPETPPKRQE AQNWFSWFFQ PSESKSHLHT 

       310        320        330        340        350        360 
TTKMPGTESN TNPTGWKPNE ENEDETDKYP NFSGSGIDDD EDFISSTIAT TPWVSAHTKQ 

       370        380        390        400        410        420 
NQERTQWNPI HSNPEVLLQT TTRMTDIDRN STSAHGENWT QEPQPPFNNH EYQDEEETPH 

       430        440        450        460        470        480 
ATSTTWADPN STTEEAATQK EKWFENEWQG KNPPTPSEDS HVTEGTTASA HNNHPSQRMT 

       490        500        510        520        530        540 
TQSQEDVSWT DFFDPISHPM GQGHQTESKD TGSSHSTTLQ PTAAPNTHLV EDLNRTGPLS 

       550        560        570        580        590        600 
VTTPQSHSQN FSTLPGELEE GEDHPTTSVL PSSTKSGRRR GGSLPRDTTT SLEGYTPQYP 

       610        620        630        640        650        660 
DTMENGTLFP VTPAKTEVFG ETEGTVATDS NFNVDGSLPG DGDSSMDPRG GFDTVTHGSE 

       670        680        690        700        710        720 
LAGHSSGNQD SGVTTTSGPA RRPQIPEWLI ILASLLALAL ILAVCIAVNS RRRCGQKKKL 

       730        740        750        760        770        780 
VINSGNGTVE DRKPSELNGE ASKSQEMVHL VNKEPTETPD QFMTADETRN LQSVDMKIGV

« Hide

References

[1]"Rattus norvegicus CD44 protein sequence."
Hofmann M.
Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BDX EMBL AAB54002.1.
Tissue: Pancreas EMBL AAB54002.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U96138 mRNA. Translation: AAB54002.1.
IPIIPI00195685.
RefSeqNP_037056.2. NM_012924.2.
UniGeneRn.1120.

3D structure databases

HSSPHSSP built from PDB template 1O7B based on UniProtKB P98066.
ProteinModelPortalO08779.
SMRO08779. Positions 23-172.
ModBaseSearch...

Protein-protein interaction databases

STRINGO08779.

Proteomic databases

PRIDEO08779.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID25406.
KEGGrno:25406.

Organism-specific databases

CTD960.

Phylogenomic databases

HOGENOMHOG000231746.
HOVERGENHBG003850.
InParanoidO08779.
KOK06256.

Gene expression databases

ArrayExpressO08779.
GenevestigatorO08779.

Family and domain databases

Gene3D3.10.100.10. 1 hit.
InterProIPR016186. C-type_lectin-like.
IPR016187. C-type_lectin_fold.
IPR001231. CD44_antigen.
IPR000538. Link.
[Graphical view]
PfamPF00193. Xlink. 1 hit.
[Graphical view]
PRINTSPR00658. CD44.
PR01265. LINKMODULE.
SMARTSM00445. LINK. 1 hit.
[Graphical view]
SUPFAMSSF56436. C-type_lectin_fold. 1 hit.
PROSITEPS01241. LINK_1. 1 hit.
PS50963. LINK_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio606519.

Entry information

Entry nameO08779_RAT
AccessionPrimary (citable) accession number: O08779
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: March 6, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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