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Protein
Submitted name:

Pectate lyase

Gene

pel

Organism
Pseudonocardia sp.
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyaseImported (EC:4.2.2.2Imported)
Gene namesi
Name:pelImported
OrganismiPseudonocardia sp.Imported
Taxonomic identifieri60912 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaePseudonocardia

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
ChainiPRO_500415712427 – 310Sequence analysisAdd BLAST284

Structurei

3D structure databases

ProteinModelPortaliO08454.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 250Amb_allInterPro annotationAdd BLAST206

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
SM00710. PbH1. 3 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

O08454-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPQRTALIS AAVLVLGAVS IPQATAAPFG LVGWATQGGG TTGGGSATPI
60 70 80 90 100
TVTSASAFVD AAKSSSAAVI RVSGTISLPS MTKVASNKTI EGVGSSSVIT
110 120 130 140 150
GQGLNIANAS NVVVRNLTFR NWGDDAINVQ YSTRVWIDHN SFSNGYDGAV
160 170 180 190 200
DVKRASDYVT VSWNKFSSHN KTMLLGHSDD NGSEDRGKLR VTYHHNWFDG
210 220 230 240 250
TQQRHPRVRF GNPVHVYNNY YGGVTSYGVA STMEAGVLVE GNYFENTGDP
260 270 280 290 300
FHRGEGSSPG GALVARGNHF VNSGTGDQGG SVKSLPYSYP LDSASTVKSV
310
VTAGAGAGRG
Length:310
Mass (Da):32,238
Last modified:July 1, 1997 - v1
Checksum:iF6773D8A7E34BC3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF002241 Genomic DNA. Translation: AAC38059.1.
PIRiJC6502.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF002241 Genomic DNA. Translation: AAC38059.1.
PIRiJC6502.

3D structure databases

ProteinModelPortaliO08454.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
SM00710. PbH1. 3 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO08454_9PSEU
AccessioniPrimary (citable) accession number: O08454
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: December 9, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.