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Protein
Submitted name:

Cytochrome

Gene

soxD

Organism
Paracoccus denitrificans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei70 – 701Heme (covalent)Combined sources
Metal bindingi74 – 741Iron (heme axial ligand); via tele nitrogenCombined sources
Metal bindingi121 – 1211Iron (heme axial ligand)Combined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

HemeCombined sources, Iron, Metal-binding

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-12240.

Names & Taxonomyi

Protein namesi
Submitted name:
CytochromeImported
Gene namesi
Name:soxDImported
OrganismiParacoccus denitrificansImported
Taxonomic identifieri266 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 384360Sequence analysisPRO_5004157781Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi188 ↔ 192Combined sources

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2XTSX-ray1.33B/D25-229[»]
ProteinModelPortaliO07819.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini57 – 14589Cytochrome cInterPro annotationAdd
BLAST
Domaini280 – 383104Cytochrome cInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
IPR002327. Cyt_c_1A/1B.
[Graphical view]
PANTHERiPTHR11961. PTHR11961. 1 hit.
PfamiPF00034. Cytochrom_C. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view]
PRINTSiPR00604. CYTCHRMECIAB.
SUPFAMiSSF46626. SSF46626. 2 hits.
PROSITEiPS51007. CYTC. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O07819-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKSLELFLG SVLAASVLAG PAMADKLGLG REALPEEISA WDTAVLPDGQ
60 70 80 90 100
GLRPGSGDVA TGDALFADNC ASCHGDFAEG LDSWPVLAGG DGSLTDPRPV
110 120 130 140 150
KTIGSYWPYL STVYDYVHRS MPFGSAQTLS VDDTYAITAF LLYSNGLVED
160 170 180 190 200
DFVLTHENFT QVVLPNAEGF YPDDRDQTEY PLFSKEPCMT DCAVGVEITK
210 220 230 240 250
RAVDLNVTPE DPDGRPAGSM PDLGAAAAPA EPAEPVEKKA EAAPAEAPAP
260 270 280 290 300
AAAPEVVVKA AAMAPEAPAP AGAATAADPT LLAEGEKVFK KCAACHKVGD
310 320 330 340 350
DAKNGTGPLL NGIVGRAAGD IEGFKYSKPL LAMASEGLVW DDASLHAFLE
360 370 380
NPKGFMKGTK MSFAGLKKED ERAAVIAYLA TFAK
Length:384
Mass (Da):39,985
Last modified:July 1, 1997 - v1
Checksum:i9926A674C859CEF5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79242 Genomic DNA. Translation: CAA55825.1.
PIRiT46966.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X79242 Genomic DNA. Translation: CAA55825.1.
PIRiT46966.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2XTSX-ray1.33B/D25-229[»]
ProteinModelPortaliO07819.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-12240.

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
IPR002327. Cyt_c_1A/1B.
[Graphical view]
PANTHERiPTHR11961. PTHR11961. 1 hit.
PfamiPF00034. Cytochrom_C. 1 hit.
PF13442. Cytochrome_CBB3. 1 hit.
[Graphical view]
PRINTSiPR00604. CYTCHRMECIAB.
SUPFAMiSSF46626. SSF46626. 2 hits.
PROSITEiPS51007. CYTC. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO07819_PARDE
AccessioniPrimary (citable) accession number: O07819
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: March 16, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.