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Protein

Putative quinone oxidoreductase YhfP

Gene

yhfP

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei45NADP; via amide nitrogenBy similarity1
Binding sitei202NADPBy similarity1
Binding sitei248NADP; via amide nitrogenBy similarity1
Binding sitei262NADP; via carbonyl oxygenBy similarity1
Binding sitei273NADPBy similarity1
Binding sitei320NADPBy similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi160 – 163NADPBy similarity4
Nucleotide bindingi182 – 184NADPBy similarity3

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NADP

Enzyme and pathway databases

BioCyciBSUB:BSU10320-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative quinone oxidoreductase YhfP (EC:1.6.5.-)
Gene namesi
Name:yhfP
Ordered Locus Names:BSU10320
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003608611 – 330Putative quinone oxidoreductase YhfPAdd BLAST330

Proteomic databases

PaxDbiO07615.

Interactioni

Subunit structurei

Homodimer, or homotetramer.1 Publication

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100005726.

Structurei

Secondary structure

1330
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 10Combined sources7
Helixi13 – 15Combined sources3
Beta strandi20 – 29Combined sources10
Beta strandi31 – 38Combined sources8
Beta strandi41 – 43Combined sources3
Helixi45 – 50Combined sources6
Beta strandi62 – 64Combined sources3
Beta strandi67 – 75Combined sources9
Beta strandi86 – 91Combined sources6
Turni95 – 97Combined sources3
Beta strandi101 – 108Combined sources8
Helixi110 – 112Combined sources3
Beta strandi113 – 115Combined sources3
Helixi122 – 144Combined sources23
Helixi149 – 151Combined sources3
Beta strandi154 – 158Combined sources5
Helixi162 – 174Combined sources13
Beta strandi178 – 186Combined sources9
Helixi188 – 194Combined sources7
Beta strandi197 – 201Combined sources5
Helixi202 – 205Combined sources4
Beta strandi218 – 224Combined sources7
Helixi228 – 234Combined sources7
Beta strandi237 – 245Combined sources9
Beta strandi254 – 256Combined sources3
Helixi259 – 262Combined sources4
Beta strandi267 – 270Combined sources4
Beta strandi273 – 275Combined sources3
Helixi278 – 287Combined sources10
Turni288 – 291Combined sources4
Beta strandi300 – 305Combined sources6
Helixi307 – 309Combined sources3
Helixi310 – 316Combined sources7
Turni317 – 320Combined sources4
Beta strandi323 – 328Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TT7X-ray2.70A/B/C/D/E/F1-330[»]
1Y9EX-ray2.80A/B/C/D/E/F1-330[»]
ProteinModelPortaliO07615.
SMRiO07615.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO07615.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0604. LUCA.
HOGENOMiHOG000294662.
InParanoidiO07615.
OMAiSEWAVAK.
PhylomeDBiO07615.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
3.90.180.10. 1 hit.
InterProiIPR014188. Acrylyl-CoA_reductase_AcuI.
IPR013149. ADH_C.
IPR013154. ADH_N.
IPR002085. ADH_SF_Zn-type.
IPR011032. GroES-like.
IPR016040. NAD(P)-bd_dom.
IPR020843. PKS_ER.
[Graphical view]
PANTHERiPTHR11695. PTHR11695. 1 hit.
PTHR11695:SF13. PTHR11695:SF13. 1 hit.
PfamiPF08240. ADH_N. 1 hit.
PF00107. ADH_zinc_N. 1 hit.
[Graphical view]
SMARTiSM00829. PKS_ER. 1 hit.
[Graphical view]
SUPFAMiSSF50129. SSF50129. 1 hit.
SSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR02823. oxido_YhdH. 1 hit.

Sequencei

Sequence statusi: Complete.

O07615-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLFQALQA EKNADDVSVH VKTISTEDLP KDGVLIKVAY SGINYKDGLA
60 70 80 90 100
GKAGGNIVRE YPLILGIDAA GTVVSSNDPR FAEGDEVIAT SYELGVSRDG
110 120 130 140 150
GLSEYASVPG DWLVPLPQNL SLKEAMVYGT AGFTAALSVH RLEQNGLSPE
160 170 180 190 200
KGSVLVTGAT GGVGGIAVSM LNKRGYDVVA STGNREAADY LKQLGASEVI
210 220 230 240 250
SREDVYDGTL KALSKQQWQG AVDPVGGKQL ASLLSKIQYG GSVAVSGLTG
260 270 280 290 300
GGEVPATVYP FILRGVSLLG IDSVYCPMDV RAAVWERMSS DLKPDQLLTI
310 320 330
VDREVSLEET PGALKDILQN RIQGRVIVKL
Length:330
Mass (Da):34,756
Last modified:July 1, 1997 - v1
Checksum:i4B864054355D055C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14084 Genomic DNA. Translation: CAA74539.1.
AL009126 Genomic DNA. Translation: CAB12872.1.
PIRiE69831.
RefSeqiNP_388913.1. NC_000964.3.
WP_003233163.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB12872; CAB12872; BSU10320.
GeneIDi939312.
KEGGibsu:BSU10320.
PATRICi18973764. VBIBacSub10457_1076.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14084 Genomic DNA. Translation: CAA74539.1.
AL009126 Genomic DNA. Translation: CAB12872.1.
PIRiE69831.
RefSeqiNP_388913.1. NC_000964.3.
WP_003233163.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TT7X-ray2.70A/B/C/D/E/F1-330[»]
1Y9EX-ray2.80A/B/C/D/E/F1-330[»]
ProteinModelPortaliO07615.
SMRiO07615.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100005726.

Proteomic databases

PaxDbiO07615.

Protocols and materials databases

DNASUi939312.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12872; CAB12872; BSU10320.
GeneIDi939312.
KEGGibsu:BSU10320.
PATRICi18973764. VBIBacSub10457_1076.

Phylogenomic databases

eggNOGiCOG0604. LUCA.
HOGENOMiHOG000294662.
InParanoidiO07615.
OMAiSEWAVAK.
PhylomeDBiO07615.

Enzyme and pathway databases

BioCyciBSUB:BSU10320-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO07615.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
3.90.180.10. 1 hit.
InterProiIPR014188. Acrylyl-CoA_reductase_AcuI.
IPR013149. ADH_C.
IPR013154. ADH_N.
IPR002085. ADH_SF_Zn-type.
IPR011032. GroES-like.
IPR016040. NAD(P)-bd_dom.
IPR020843. PKS_ER.
[Graphical view]
PANTHERiPTHR11695. PTHR11695. 1 hit.
PTHR11695:SF13. PTHR11695:SF13. 1 hit.
PfamiPF08240. ADH_N. 1 hit.
PF00107. ADH_zinc_N. 1 hit.
[Graphical view]
SMARTiSM00829. PKS_ER. 1 hit.
[Graphical view]
SUPFAMiSSF50129. SSF50129. 1 hit.
SSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR02823. oxido_YhdH. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYHFP_BACSU
AccessioniPrimary (citable) accession number: O07615
Secondary accession number(s): Q796T7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: November 2, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.