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Protein

Uncharacterized HTH-type transcriptional regulator YhdI

Gene

yhdI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Cofactori

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi41 – 60H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionAminotransferase, DNA-binding, Transferase
Biological processTranscription, Transcription regulation
LigandPyridoxal phosphate

Enzyme and pathway databases

BioCyciBSUB:BSU09480-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YhdI
Gene namesi
Name:yhdI
Ordered Locus Names:BSU09480
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003606981 – 469Uncharacterized HTH-type transcriptional regulator YhdIAdd BLAST469

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei309N6-(pyridoxal phosphate)lysineBy similarity1

Proteomic databases

PaxDbiO07578
PRIDEiO07578

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100005306

Structurei

3D structure databases

ProteinModelPortaliO07578
SMRiO07578
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 81HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated

Phylogenomic databases

eggNOGiENOG4105C1I Bacteria
COG1167 LUCA
HOGENOMiHOG000223052
InParanoidiO07578
KOiK00375
OMAiRRHRAWI
PhylomeDBiO07578

Family and domain databases

CDDicd07377 WHTH_GntR, 1 hit
Gene3Di1.10.10.10, 1 hit
3.40.640.10, 1 hit
InterProiView protein in InterPro
IPR004839 Aminotransferase_I/II
IPR015424 PyrdxlP-dep_Trfase
IPR015421 PyrdxlP-dep_Trfase_major
IPR000524 Tscrpt_reg_HTH_GntR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00155 Aminotran_1_2, 1 hit
PF00392 GntR, 1 hit
SMARTiView protein in SMART
SM00345 HTH_GNTR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF53383 SSF53383, 1 hit
PROSITEiView protein in PROSITE
PS50949 HTH_GNTR, 1 hit

Sequencei

Sequence statusi: Complete.

O07578-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDITPFLDKK SKTPLYEQLY TFFKQEISHA RITKGTRLPS KRRLSSLLDV
60 70 80 90 100
STATIERAYE QLTAEGYVKS KPKIGWFAAE VEPGFPTAPD HFQQSVQPGL
110 120 130 140 150
HQKNAPAIDF HQGSVDPTLF PFNAWRKSIV KSLDRYSGSF HTSGDPQGEY
160 170 180 190 200
ELRHMIARFV RLSRGVNCEP GQIIIGAGTT VLLQNLCLSL KPGTKIGFEE
210 220 230 240 250
PGFHRSRRMF EANHMDVTPI CSDAEGVLPD ELYRQNPYLM YTTPSHQFPI
260 270 280 290 300
GTIMTITRRQ ELLAWAAETN SFIIEDDYDG EFRYSGHPIP SLQGLDPNGR
310 320 330 340 350
VIYLGTFSKS LLPSLRLSFM IVPPELMEPI QNNVQLMKQT VSAHSQLALA
360 370 380 390 400
DFIETGEWQK HINRMRSLYR KKHAVLLEAI RSELGNTVEI LGKNSGLHIL
410 420 430 440 450
LRLLFPASEE EAIQAAADHG VTLYPVSPSY IEQTPFTSVL IGYGGLSEED
460
IRLGIQKLKT AWAPLISSY
Length:469
Mass (Da):52,764
Last modified:July 1, 1997 - v1
Checksum:i0B31E425069B19F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14082 Genomic DNA Translation: CAA74493.1
AL009126 Genomic DNA Translation: CAB12787.1
PIRiG69825
RefSeqiNP_388829.1, NC_000964.3
WP_003245209.1, NZ_JNCM01000035.1

Genome annotation databases

EnsemblBacteriaiCAB12787; CAB12787; BSU09480
GeneIDi939277
KEGGibsu:BSU09480
PATRICifig|224308.179.peg.1021

Entry informationi

Entry nameiYHDI_BACSU
AccessioniPrimary (citable) accession number: O07578
Secondary accession number(s): Q796X5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: May 23, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

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