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Protein

Uncharacterized HTH-type transcriptional regulator YhdI

Gene

yhdI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi41 – 60H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Pyridoxal phosphate

Enzyme and pathway databases

BioCyciBSUB:BSU09480-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YhdI
Gene namesi
Name:yhdI
Ordered Locus Names:BSU09480
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003606981 – 469Uncharacterized HTH-type transcriptional regulator YhdIAdd BLAST469

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei309N6-(pyridoxal phosphate)lysineBy similarity1

Proteomic databases

PaxDbiO07578.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100005306.

Structurei

3D structure databases

ProteinModelPortaliO07578.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 81HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated
Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000223052.
InParanoidiO07578.
KOiK00375.
OMAiTQGWLQA.
PhylomeDBiO07578.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O07578-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDITPFLDKK SKTPLYEQLY TFFKQEISHA RITKGTRLPS KRRLSSLLDV
60 70 80 90 100
STATIERAYE QLTAEGYVKS KPKIGWFAAE VEPGFPTAPD HFQQSVQPGL
110 120 130 140 150
HQKNAPAIDF HQGSVDPTLF PFNAWRKSIV KSLDRYSGSF HTSGDPQGEY
160 170 180 190 200
ELRHMIARFV RLSRGVNCEP GQIIIGAGTT VLLQNLCLSL KPGTKIGFEE
210 220 230 240 250
PGFHRSRRMF EANHMDVTPI CSDAEGVLPD ELYRQNPYLM YTTPSHQFPI
260 270 280 290 300
GTIMTITRRQ ELLAWAAETN SFIIEDDYDG EFRYSGHPIP SLQGLDPNGR
310 320 330 340 350
VIYLGTFSKS LLPSLRLSFM IVPPELMEPI QNNVQLMKQT VSAHSQLALA
360 370 380 390 400
DFIETGEWQK HINRMRSLYR KKHAVLLEAI RSELGNTVEI LGKNSGLHIL
410 420 430 440 450
LRLLFPASEE EAIQAAADHG VTLYPVSPSY IEQTPFTSVL IGYGGLSEED
460
IRLGIQKLKT AWAPLISSY
Length:469
Mass (Da):52,764
Last modified:July 1, 1997 - v1
Checksum:i0B31E425069B19F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14082 Genomic DNA. Translation: CAA74493.1.
AL009126 Genomic DNA. Translation: CAB12787.1.
PIRiG69825.
RefSeqiNP_388829.1. NC_000964.3.
WP_003245209.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB12787; CAB12787; BSU09480.
GeneIDi939277.
KEGGibsu:BSU09480.
PATRICi18973592. VBIBacSub10457_0990.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14082 Genomic DNA. Translation: CAA74493.1.
AL009126 Genomic DNA. Translation: CAB12787.1.
PIRiG69825.
RefSeqiNP_388829.1. NC_000964.3.
WP_003245209.1. NZ_JNCM01000035.1.

3D structure databases

ProteinModelPortaliO07578.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100005306.

Proteomic databases

PaxDbiO07578.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12787; CAB12787; BSU09480.
GeneIDi939277.
KEGGibsu:BSU09480.
PATRICi18973592. VBIBacSub10457_0990.

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000223052.
InParanoidiO07578.
KOiK00375.
OMAiTQGWLQA.
PhylomeDBiO07578.

Enzyme and pathway databases

BioCyciBSUB:BSU09480-MONOMER.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYHDI_BACSU
AccessioniPrimary (citable) accession number: O07578
Secondary accession number(s): Q796X5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: October 5, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.