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O07575

- YHDF_BACSU

UniProt

O07575 - YHDF_BACSU

Protein

Uncharacterized oxidoreductase YhdF

Gene

yhdF

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 94 (01 Oct 2014)
      Sequence version 1 (01 Jul 1997)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei181 – 1811SubstrateBy similarity
    Active sitei194 – 1941Proton acceptorPROSITE-ProRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi49 – 7325NAD or NADPBy similarityAdd
    BLAST

    GO - Molecular functioni

    1. oxidoreductase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Enzyme and pathway databases

    BioCyciBSUB:BSU09450-MONOMER.
    RETL1328306-WGS:GSTH-6065-MONOMER.
    RETL1328306-WGS:GSTH-6162-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized oxidoreductase YhdF (EC:1.-.-.-)
    Gene namesi
    Name:yhdF
    Ordered Locus Names:BSU09450
    OrganismiBacillus subtilis (strain 168)
    Taxonomic identifieri224308 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001570: Chromosome

    Organism-specific databases

    GenoListiBSU09450.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 289289Uncharacterized oxidoreductase YhdFPRO_0000054843Add
    BLAST

    Proteomic databases

    PaxDbiO07575.

    Interactioni

    Protein-protein interaction databases

    STRINGi224308.BSU09450.

    Structurei

    3D structure databases

    ProteinModelPortaliO07575.
    SMRiO07575. Positions 14-288.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1028.
    OMAiDAAHCRA.
    OrthoDBiEOG6N3CR8.
    PhylomeDBiO07575.

    Family and domain databases

    Gene3Di3.40.50.720. 1 hit.
    InterProiIPR002198. DH_sc/Rdtase_SDR.
    IPR002347. Glc/ribitol_DH.
    IPR016040. NAD(P)-bd_dom.
    IPR020904. Sc_DH/Rdtase_CS.
    [Graphical view]
    PRINTSiPR00081. GDHRDH.
    PR00080. SDRFAMILY.
    PROSITEiPS00061. ADH_SHORT. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O07575-1 [UniParc]FASTAAdd to Basket

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    MNPMDRQTEG QEPQHQDRQP GIESKMNPLP LSEDEDYRGS GKLKGKVAII    50
    TGGDSGIGRA AAIAFAKEGA DISILYLDEH SDAEETRKRI EKENVRCLLI 100
    PGDVGDENHC EQAVQQTVDH FGKLDILVNN AAEQHPQDSI LNISTEQLEK 150
    TFRTNIFSMF HMTKKALPHL QEGCAIINTT SITAYEGDTA LIDYSSTKGA 200
    IVSFTRSMAK SLADKGIRVN AVAPGPIWTP LIPATFPEEK VKQHGLDTPM 250
    GRPGQPVEHA GAYVLLASDE SSYMTGQTIH VNGGRFIST 289
    Length:289
    Mass (Da):31,509
    Last modified:July 1, 1997 - v1
    Checksum:i4EC98C62B9241BC1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Y14082 Genomic DNA. Translation: CAA74490.1.
    AL009126 Genomic DNA. Translation: CAB12784.1.
    PIRiD69825.
    RefSeqiNP_388826.1. NC_000964.3.

    Genome annotation databases

    EnsemblBacteriaiCAB12784; CAB12784; BSU09450.
    GeneIDi939749.
    KEGGibsu:BSU09450.
    PATRICi18973586. VBIBacSub10457_0987.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Y14082 Genomic DNA. Translation: CAA74490.1 .
    AL009126 Genomic DNA. Translation: CAB12784.1 .
    PIRi D69825.
    RefSeqi NP_388826.1. NC_000964.3.

    3D structure databases

    ProteinModelPortali O07575.
    SMRi O07575. Positions 14-288.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224308.BSU09450.

    Proteomic databases

    PaxDbi O07575.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAB12784 ; CAB12784 ; BSU09450 .
    GeneIDi 939749.
    KEGGi bsu:BSU09450.
    PATRICi 18973586. VBIBacSub10457_0987.

    Organism-specific databases

    GenoListi BSU09450.

    Phylogenomic databases

    eggNOGi COG1028.
    OMAi DAAHCRA.
    OrthoDBi EOG6N3CR8.
    PhylomeDBi O07575.

    Enzyme and pathway databases

    BioCyci BSUB:BSU09450-MONOMER.
    RETL1328306-WGS:GSTH-6065-MONOMER.
    RETL1328306-WGS:GSTH-6162-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.720. 1 hit.
    InterProi IPR002198. DH_sc/Rdtase_SDR.
    IPR002347. Glc/ribitol_DH.
    IPR016040. NAD(P)-bd_dom.
    IPR020904. Sc_DH/Rdtase_CS.
    [Graphical view ]
    PRINTSi PR00081. GDHRDH.
    PR00080. SDRFAMILY.
    PROSITEi PS00061. ADH_SHORT. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The 172 kb prkA-addAB region from 83 degrees to 97 degrees of the Bacillus subtilis chromosome contains several dysfunctional genes, the glyB marker, many genes encoding transporter proteins, and the ubiquitous hit gene."
      Noback M.A., Holsappel S., Kiewiet R., Terpstra P., Wambutt R., Wedler H., Venema G., Bron S.
      Microbiology 144:859-875(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: 168.
    2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
      Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
      , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
      Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 168.

    Entry informationi

    Entry nameiYHDF_BACSU
    AccessioniPrimary (citable) accession number: O07575
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 15, 1998
    Last sequence update: July 1, 1997
    Last modified: October 1, 2014
    This is version 94 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Bacillus subtilis
      Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3