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Protein

Uncharacterized protein YhdB

Gene

yhdB

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU09350-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YhdB
Gene namesi
Name:yhdB
Ordered Locus Names:BSU09350
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU09350.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8080Uncharacterized protein YhdBPRO_0000360067Add
BLAST

Proteomic databases

PaxDbiO07530.

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU09350.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG46072.
HOGENOMiHOG000083812.
OMAiRYIDHAL.
OrthoDBiEOG60KN73.

Family and domain databases

InterProiIPR025431. YhdB-like.
[Graphical view]
PfamiPF14148. YhdB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O07530-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDYADYDKAL YYTHRSQWDN LLILMVRTED DLLSKRIEHF LHAYHFEQDY
60 70 80
AVLEKMLYSL LRYIDHATEL TYEDQIALLT
Length:80
Mass (Da):9,793
Last modified:July 1, 1997 - v1
Checksum:i159B7C73163A0395
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14079 Genomic DNA. Translation: CAA74435.1.
AL009126 Genomic DNA. Translation: CAB12763.1.
PIRiH69824.
RefSeqiNP_388816.1. NC_000964.3.
WP_003233373.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB12763; CAB12763; BSU09350.
GeneIDi939272.
KEGGibsu:BSU09350.
PATRICi18973566. VBIBacSub10457_0977.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y14079 Genomic DNA. Translation: CAA74435.1.
AL009126 Genomic DNA. Translation: CAB12763.1.
PIRiH69824.
RefSeqiNP_388816.1. NC_000964.3.
WP_003233373.1. NZ_JNCM01000035.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU09350.

Proteomic databases

PaxDbiO07530.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12763; CAB12763; BSU09350.
GeneIDi939272.
KEGGibsu:BSU09350.
PATRICi18973566. VBIBacSub10457_0977.

Organism-specific databases

GenoListiBSU09350.

Phylogenomic databases

eggNOGiNOG46072.
HOGENOMiHOG000083812.
OMAiRYIDHAL.
OrthoDBiEOG60KN73.

Enzyme and pathway databases

BioCyciBSUB:BSU09350-MONOMER.

Family and domain databases

InterProiIPR025431. YhdB-like.
[Graphical view]
PfamiPF14148. YhdB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The 172 kb prkA-addAB region from 83 degrees to 97 degrees of the Bacillus subtilis chromosome contains several dysfunctional genes, the glyB marker, many genes encoding transporter proteins, and the ubiquitous hit gene."
    Noback M.A., Holsappel S., Kiewiet R., Terpstra P., Wambutt R., Wedler H., Venema G., Bron S.
    Microbiology 144:859-875(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYHDB_BACSU
AccessioniPrimary (citable) accession number: O07530
Secondary accession number(s): Q796X9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: May 27, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.