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Protein

Uncharacterized HTH-type transcriptional regulator YvdT

Gene

yvdT

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi29 – 4820H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU34480-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YvdT
Gene namesi
Name:yvdT
Ordered Locus Names:BSU34480
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 194194Uncharacterized HTH-type transcriptional regulator YvdTPRO_0000360524Add
BLAST

Proteomic databases

PaxDbiO07001.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100018681.

Structurei

Secondary structure

1
194
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 2316Combined sources
Turni25 – 273Combined sources
Helixi30 – 378Combined sources
Helixi41 – 477Combined sources
Beta strandi49 – 513Combined sources
Helixi54 – 7219Combined sources
Helixi80 – 11132Combined sources
Helixi115 – 13824Combined sources
Helixi148 – 16720Combined sources
Helixi176 – 19116Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2F07X-ray2.30A/B1-194[»]
ProteinModelPortaliO07001.
SMRiO07001. Positions 1-194.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO07001.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 6661HTH tetR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000084091.
InParanoidiO07001.
OMAiVRWTART.
PhylomeDBiO07001.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O07001-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKQTSGKYE KILQAAIEVI SEKGLDKASI SDIVKKAGTA QGTFYLYFSS
60 70 80 90 100
KNALIPAIAE NLLTHTLDQI KGRLHGDEDF WTVLDILIDE TFLITERHKD
110 120 130 140 150
IIVLCYSGLA IDHSMEKWET IYQPYYSWLE KIINKAIANH EVTEGINSKW
160 170 180 190
TARTIINLVE NTAERFYIGF EQDENVEVYK KEIFTFLKRS LGTA
Length:194
Mass (Da):22,227
Last modified:July 1, 1997 - v1
Checksum:i0F5CD6A0780BAF39
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z94043 Genomic DNA. Translation: CAB08049.1.
AL009126 Genomic DNA. Translation: CAB15453.1.
PIRiC70035.
RefSeqiNP_391328.1. NC_000964.3.
WP_003244443.1. NZ_JNCM01000033.1.

Genome annotation databases

EnsemblBacteriaiCAB15453; CAB15453; BSU34480.
GeneIDi936423.
KEGGibsu:BSU34480.
PATRICi18978898. VBIBacSub10457_3612.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z94043 Genomic DNA. Translation: CAB08049.1.
AL009126 Genomic DNA. Translation: CAB15453.1.
PIRiC70035.
RefSeqiNP_391328.1. NC_000964.3.
WP_003244443.1. NZ_JNCM01000033.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2F07X-ray2.30A/B1-194[»]
ProteinModelPortaliO07001.
SMRiO07001. Positions 1-194.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100018681.

Proteomic databases

PaxDbiO07001.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15453; CAB15453; BSU34480.
GeneIDi936423.
KEGGibsu:BSU34480.
PATRICi18978898. VBIBacSub10457_3612.

Phylogenomic databases

HOGENOMiHOG000084091.
InParanoidiO07001.
OMAiVRWTART.
PhylomeDBiO07001.

Enzyme and pathway databases

BioCyciBSUB:BSU34480-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO07001.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYVDT_BACSU
AccessioniPrimary (citable) accession number: O07001
Secondary accession number(s): Q795H5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: September 7, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.