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O06993 (YVDK_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized glycosyl hydrolase yvdK
EC=3.2.1.-
Gene names
Name:yvdK
Ordered Locus Names:BSU34570
OrganismBacillus subtilis
Taxonomic identifier1423 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length757 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 65 family.

Ontologies

Keywords
   Molecular functionGlycosidase
Hydrolase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

hydrolase activity, acting on glycosyl bonds

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 757757Uncharacterized glycosyl hydrolase yvdK
PRO_0000108018

Sequences

Sequence LengthMass (Da)Tools
O06993 [UniParc].

Last modified July 1, 1997. Version 1.
Checksum: 75B3ECE933850F29

FASTA75788,279
        10         20         30         40         50         60 
MINQRLFEID EWKIKTNTFN KEHTRLLESL TSLANGYMGV RGNFEEGYSG DSHQGTYIAG 

        70         80         90        100        110        120 
VWFPDKTRVG WWKNGYPEYF GKVINAMNFM GIGLYVDGEK IDLHQNPIEL FEVELNMKEG 

       130        140        150        160        170        180 
ILRRSAVVRI QDKTVRIRSE RFLSLAVKEL CAIHYEAECL TGDAVITLVP YLDGNVANED 

       190        200        210        220        230        240 
SNYQEQFWQE EAKGADSHSG HLAAKTIENP FGTPRFTVLA AMANETEGFV HESFKTTEMY 

       250        260        270        280        290        300 
VENRYSYQTK ASLKKFVIVT TSRDFREEEL LSKAKELLAD VVENGYEDAK RRHTDRWKER 

       310        320        330        340        350        360 
WAKADIEIKG DEELQQGIRY NIFQLFSTYY GGDARLNIGP KGFTGEKYGG AAYWDTEAYA 

       370        380        390        400        410        420 
VPMYLATAEP EVTKNLLLYR YHQLEAAKRN AAKLGMKGAL YPMVTFTGDE CHNEWEITFE 

       430        440        450        460        470        480 
EIHRNGAICY AIYNYINYTG DRNYMEEYGI DVLVAVSRFW ADRVHFSKRK NKYMIHGVTG 

       490        500        510        520        530        540 
PNEYENNVNN NWYTNVIAAW TLEYTLQSLE SISAEKRRHL DVQEVELEVW REIIQHMYYP 

       550        560        570        580        590        600 
FSEELQIFVQ HDTFLDKDLQ TVDELDPAER PLYQNWSWDK ILRSNFIKQA DVLQGIYLFN 

       610        620        630        640        650        660 
DRFTMEEKRR NFEFYEPMTV HESSLSPSVH AILAAELKLE KKALELYKRT ARLDLDNYNH 

       670        680        690        700        710        720 
DTEEGLHITS MTGSWLAIVH GFAGMRTANE TLSFAPFLPK EWDEYSFNIN YRNRLINVTV 

       730        740        750 
DEKRVIFELV KGEPLHMNVY EEPVVLQGRC ERRTPNE

« Hide

References

« Hide 'large scale' references
[1]Denizot F.
Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed: 9384377] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		Z94043 Genomic DNA. Translation: CAB08040.1.
AL009126 Genomic DNA. Translation: CAB15462.1.
PIRC70034.
RefSeqNP_391337.1. NC_000964.3.

3D structure databases

ProteinModelPortalO06993.
SMRO06993. Positions 3-748.
ModBaseSearch...

Protein-protein interaction databases

IntActO06993. 1 interaction.

Protein family/group databases

CAZyGH65. Glycoside Hydrolase Family 65.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000003438; EBBACP00000003438; EBBACG00000003431.
GeneID938621.
GenomeReviewsGene locus BSU34570 in contig AL009126_GR.
KEGGbsu:BSU34570.
NMPDRfig|224308.1.peg.3463.
PATRIC18978918. VBIBacSub10457_3621.

Organism-specific databases

GenoListBSU34570.

Phylogenomic databases

GeneTreeEBGT00050000006312.
HOGENOMHBG727686.
OMAQAQHNAR.
PhylomeDBO06993.
ProtClustDBPRK13807.

Enzyme and pathway databases

BioCycBSUB:BSU34570-MONOMER.

Family and domain databases

InterProIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR011013. Glyco_hydro-type_carb-bd.
IPR005194. Glyco_hydro_65_C.
IPR005195. Glyco_hydro_65_M.
IPR005196. Glyco_hydro_65_N.
IPR017045. Malt_Pase/Glycosyl_Hdrlase.
[Graphical view]
Gene3DG3DSA:1.50.10.10. CelA/Cel48F_cat. 1 hit.
G3DSA:2.70.98.40. Glyco_hydro_65_N. 1 hit.
KOK00691.
PfamPF03633. Glyco_hydro_65C. 1 hit.
PF03632. Glyco_hydro_65m. 1 hit.
PF03636. Glyco_hydro_65N. 1 hit.
[Graphical view]
PIRSFPIRSF036289. Glycosyl_hydrolase_malt_phosph. 1 hit.
SUPFAMSSF74650. Gal_mut_like. 1 hit.
SSF48208. Glyco_trans_6hp. 1 hit.
ProtoNetSearch...

Entry information

Entry nameYVDK_BACSU
AccessionPrimary (citable) accession number: O06993
Entry history
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 1, 1997
Last modified: January 25, 2012
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents