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Protein

Putative isomerase YitF

Gene

yitF

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Mg2+CuratedNote: Divalent metal cations. Mg2+.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei158By similarity1
Metal bindingi214Magnesium1
Metal bindingi240Magnesium1
Active sitei290By similarity1
Metal bindingi290Magnesium1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciBSUB:BSU10970-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative isomerase YitF (EC:5.-.-.-)
Gene namesi
Name:yitF
Ordered Locus Names:BSU10970
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003606911 – 371Putative isomerase YitFAdd BLAST371

Proteomic databases

PaxDbiO06741.
PRIDEiO06741.

Interactioni

Subunit structurei

Homooctamer.1 Publication

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006056.

Structurei

Secondary structure

1371
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 21Combined sources20
Beta strandi24 – 38Combined sources15
Beta strandi43 – 48Combined sources6
Helixi52 – 61Combined sources10
Helixi63 – 67Combined sources5
Helixi75 – 85Combined sources11
Helixi87 – 104Combined sources18
Helixi109 – 112Combined sources4
Beta strandi119 – 126Combined sources8
Helixi136 – 148Combined sources13
Turni149 – 151Combined sources3
Beta strandi154 – 158Combined sources5
Beta strandi160 – 162Combined sources3
Helixi164 – 178Combined sources15
Beta strandi182 – 187Combined sources6
Helixi194 – 198Combined sources5
Helixi201 – 204Combined sources4
Beta strandi210 – 214Combined sources5
Helixi222 – 229Combined sources8
Beta strandi236 – 238Combined sources3
Helixi245 – 253Combined sources9
Beta strandi258 – 260Combined sources3
Turni264 – 268Combined sources5
Helixi269 – 283Combined sources15
Helixi296 – 306Combined sources11
Beta strandi311 – 313Combined sources3
Beta strandi322 – 325Combined sources4
Helixi330 – 334Combined sources5
Beta strandi343 – 345Combined sources3
Beta strandi349 – 351Combined sources3
Helixi358 – 363Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GDQX-ray1.80A/B2-371[»]
2GGEX-ray1.89A/B/C/D/E/F/G/H2-371[»]
ProteinModelPortaliO06741.
SMRiO06741.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO06741.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105DIA. Bacteria.
COG4948. LUCA.
HOGENOMiHOG000097984.
InParanoidiO06741.
OMAiPQWISRS.
PhylomeDBiO06741.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N-like.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N_dom.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF13378. MR_MLE_C. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.

Sequencei

Sequence statusi: Complete.

O06741-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIVRIETFP LFHRLEKPYG DANGFKRYRT CYLIRIITES GIDGWGECVD
60 70 80 90 100
WLPALHVGFT KRIIPFLLGK QAGSRLSLVR TIQKWHQRAA SAVSMALTEI
110 120 130 140 150
AAKAADCSVC ELWGGRYREE IPVYASFQSY SDSPQWISRS VSNVEAQLKK
160 170 180 190 200
GFEQIKVKIG GTSFKEDVRH INALQHTAGS SITMILDANQ SYDAAAAFKW
210 220 230 240 250
ERYFSEWTNI GWLEEPLPFD QPQDYAMLRS RLSVPVAGGE NMKGPAQYVP
260 270 280 290 300
LLSQRCLDII QPDVMHVNGI DEFRDCLQLA RYFGVRASAH AYDGSLSRLY
310 320 330 340 350
ALFAQACLPP WSKMKNDHIE PIEWDVMENP FTDLVSLQPS KGMVHIPKGK
360 370
GIGTEINMEI VNRYKWDGSA Y
Length:371
Mass (Da):42,052
Last modified:July 1, 1997 - v1
Checksum:iC41FD69E471FE87E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09476 Genomic DNA. Translation: CAA70661.1.
AL009126 Genomic DNA. Translation: CAB12937.1.
PIRiG69839.
RefSeqiNP_388978.1. NC_000964.3.
WP_003245056.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB12937; CAB12937; BSU10970.
GeneIDi939345.
KEGGibsu:BSU10970.
PATRICi18973900. VBIBacSub10457_1144.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y09476 Genomic DNA. Translation: CAA70661.1.
AL009126 Genomic DNA. Translation: CAB12937.1.
PIRiG69839.
RefSeqiNP_388978.1. NC_000964.3.
WP_003245056.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2GDQX-ray1.80A/B2-371[»]
2GGEX-ray1.89A/B/C/D/E/F/G/H2-371[»]
ProteinModelPortaliO06741.
SMRiO06741.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100006056.

Proteomic databases

PaxDbiO06741.
PRIDEiO06741.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12937; CAB12937; BSU10970.
GeneIDi939345.
KEGGibsu:BSU10970.
PATRICi18973900. VBIBacSub10457_1144.

Phylogenomic databases

eggNOGiENOG4105DIA. Bacteria.
COG4948. LUCA.
HOGENOMiHOG000097984.
InParanoidiO06741.
OMAiPQWISRS.
PhylomeDBiO06741.

Enzyme and pathway databases

BioCyciBSUB:BSU10970-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO06741.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N-like.
IPR013342. Mandelate_racemase_C.
IPR013341. Mandelate_racemase_N_dom.
IPR001354. MR/MLE/MAL.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF13378. MR_MLE_C. 1 hit.
PF02746. MR_MLE_N. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYITF_BACSU
AccessioniPrimary (citable) accession number: O06741
Secondary accession number(s): Q796Q2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: November 2, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.