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Protein
Submitted name:

Cytolethal distending toxin protein B

Gene

cdtB

Organism
Haemophilus ducreyi
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cytolethal distending toxin protein BImported
Gene namesi
Name:cdtBImported
OrganismiHaemophilus ducreyiImported
Taxonomic identifieri730 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeHaemophilus

Interactioni

Protein-protein interaction databases

STRINGi233412.HD0903.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1SR4X-ray2.00B23-283[»]
SMRiO06523. Positions 23-283.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO06523.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini30 – 274245Endo/exonuclease/phosphataseInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4108TMH. Bacteria.
ENOG4111HHH. LUCA.

Family and domain databases

Gene3Di3.60.10.10. 1 hit.
InterProiIPR003539. CD_toxinB.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view]
PfamiPF03372. Exo_endo_phos. 1 hit.
[Graphical view]
PIRSFiPIRSF018539. CDT_B. 1 hit.
PRINTSiPR01388. CDTOXINB.
SUPFAMiSSF56219. SSF56219. 1 hit.

Sequencei

Sequence statusi: Complete.

O06523-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQWVKQLSVV FCVMLFSFSS YANLSDFKVA TWNLQGSSAV NESKWNINVR
60 70 80 90 100
QLLSGEQGAD ILMVQEAGSL PSSAVRTSRV IQHGGTPIEE YTWNLGTRSR
110 120 130 140 150
PNMVYIYYSR LDVGANRVNL AIVSRRQADE AFIVHSDSSV LQSRPAVGIR
160 170 180 190 200
IGTDVFFTVH ALATGGSDAV SLIRNIFTTF NSSSSPPERR VYSWMVVGDF
210 220 230 240 250
NRAPANLEVA LRQEPAVSEN TIIIAPTEPT HRSGNILDYA ILHDAHLPRR
260 270 280
EQARERIGAS LMLNQLRSQI TSDHFPVSFV RDR
Length:283
Mass (Da):31,540
Last modified:July 1, 1997 - v1
Checksum:i4C8FB205ACB6A1BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U53215 Genomic DNA. Translation: AAB57726.1.

Genome annotation databases

EnsemblBacteriaiAKO30833; AKO30833; RY60_03555.
AKO32271; AKO32271; RZ57_03560.
AKO33725; AKO33725; RZ58_03575.
AKO35172; AKO35172; RZ59_03540.
AKO36605; AKO36605; RZ61_03580.
AKO41094; AKO41094; RZ64_03515.
AKO43951; AKO43951; RZ60_03475.
GeneIDi24944656.
PATRICi20178203. VBIHaeDuc133973_0744.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U53215 Genomic DNA. Translation: AAB57726.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1SR4X-ray2.00B23-283[»]
SMRiO06523. Positions 23-283.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi233412.HD0903.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAKO30833; AKO30833; RY60_03555.
AKO32271; AKO32271; RZ57_03560.
AKO33725; AKO33725; RZ58_03575.
AKO35172; AKO35172; RZ59_03540.
AKO36605; AKO36605; RZ61_03580.
AKO41094; AKO41094; RZ64_03515.
AKO43951; AKO43951; RZ60_03475.
GeneIDi24944656.
PATRICi20178203. VBIHaeDuc133973_0744.

Phylogenomic databases

eggNOGiENOG4108TMH. Bacteria.
ENOG4111HHH. LUCA.

Miscellaneous databases

EvolutionaryTraceiO06523.

Family and domain databases

Gene3Di3.60.10.10. 1 hit.
InterProiIPR003539. CD_toxinB.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view]
PfamiPF03372. Exo_endo_phos. 1 hit.
[Graphical view]
PIRSFiPIRSF018539. CDT_B. 1 hit.
PRINTSiPR01388. CDTOXINB.
SUPFAMiSSF56219. SSF56219. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Hansen E.
    Submitted (APR-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 35000Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 35000Imported.
  3. "Assembly and function of a bacterial genotoxin."
    Nesic D., Hsu Y., Stebbins C.E.
    Nature 429:429-433(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 23-283.

Entry informationi

Entry nameiO06523_HAEDC
AccessioniPrimary (citable) accession number: O06523
Secondary accession number(s): Q7BY49
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: June 8, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.