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O06523 (O06523_HAEDC) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Cytolethal distending toxin protein B EMBL AAB57726.1
Gene names
Name:cdtB EMBL AAB57726.1
OrganismHaemophilus ducreyi EMBL AAB57726.1
Taxonomic identifier730 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pasteurellales › Pasteurellaceae › Haemophilus

Protein attributes

Sequence length283 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 1SR4
Gene Ontology (GO)
   Biological processpathogenesis

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
O06523 [UniParc].

Last modified July 1, 1997. Version 1.
Checksum: 4C8FB205ACB6A1BD

FASTA28331,540
        10         20         30         40         50         60 
MQWVKQLSVV FCVMLFSFSS YANLSDFKVA TWNLQGSSAV NESKWNINVR QLLSGEQGAD 

        70         80         90        100        110        120 
ILMVQEAGSL PSSAVRTSRV IQHGGTPIEE YTWNLGTRSR PNMVYIYYSR LDVGANRVNL 

       130        140        150        160        170        180 
AIVSRRQADE AFIVHSDSSV LQSRPAVGIR IGTDVFFTVH ALATGGSDAV SLIRNIFTTF 

       190        200        210        220        230        240 
NSSSSPPERR VYSWMVVGDF NRAPANLEVA LRQEPAVSEN TIIIAPTEPT HRSGNILDYA 

       250        260        270        280 
ILHDAHLPRR EQARERIGAS LMLNQLRSQI TSDHFPVSFV RDR

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References

[1]"A diffusible cytotoxin of Haemophilus ducreyi."
Cope L.D., Lumbley S., Latimer J.L., Klesney-Tait J., Stevens M.K., Johnson L.S., Purven M., Munson R.S. Jr., Lagergard T., Radolf J.D., Hansen E.J.
Proc. Natl. Acad. Sci. U.S.A. 94:4056-4061(1997) [PubMed: 9108104] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 35000 EMBL AAB57726.1.
[2]Hansen E.
Submitted (APR-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 35000 EMBL AAB57726.1.
[3]"Assembly and function of a bacterial genotoxin."
Nesic D., Hsu Y., Stebbins C.E.
Nature 429:429-433(2004) [PubMed: 15164065] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 23-283.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U53215 Genomic DNA. Translation: AAB57726.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1SR4X-ray2.00B23-283[»]
ProteinModelPortalO06523.
SMRO06523. Positions 23-283.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GenomeReviewsGene locus HD_0903 in contig AE017143_GR.
KEGGhdu:HD0903.
NMPDRfig|233412.1.peg.763.
PATRIC20178203. VBIHaeDuc133973_0744.

Phylogenomic databases

HOGENOMHBG373988.
OMADFKVATW.
ProtClustDBPRK15251.

Family and domain databases

InterProIPR003539. CD_toxinB.
IPR005135. Endo/exonuclease/phosphatase.
[Graphical view]
KOK11014.
PfamPF03372. Exo_endo_phos. 1 hit.
[Graphical view]
PIRSFPIRSF018539. CDT_B. 1 hit.
PRINTSPR01388. CDTOXINB.
SUPFAMSSF56219. Exo_endo_phos. 1 hit.
ProtoNetSearch...

Entry information

Entry nameO06523_HAEDC
AccessionPrimary (citable) accession number: O06523
Secondary accession number(s): Q7BY49
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: December 14, 2011
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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