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O06477 (YFMS_BACSU) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative sensory transducer protein YfmS
Alternative name(s):
Methyl-accepting chemotaxis protein
Gene names
Name:yfmS
Ordered Locus Names:BSU07360
OrganismBacillus subtilis (strain 168) [Reference proteome] [HAMAP]
Taxonomic identifier224308 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length286 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of methylation. Attractants increase the level of methylation while repellents decrease the level of methylation By similarity.

Induction

Transcriptionally regulated by SigD; part of the yfmT/yfmS operon. Ref.3

Sequence similarities

Contains 1 methyl-accepting transducer domain.

Ontologies

Keywords
   Molecular functionTransducer
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functionsignal transducer activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 286286Putative sensory transducer protein YfmS
PRO_0000388354

Regions

Domain68 – 286219Methyl-accepting transducer

Sequences

Sequence LengthMass (Da)Tools
O06477 [UniParc].

Last modified July 1, 1997. Version 1.
Checksum: 29DE50D528312005

FASTA28630,324
        10         20         30         40         50         60 
MELTINTEKE TADILDAFIK VAPYLNSLVQ DDITIGIYDT EKLLVNIPAK TFSLNVKAGD 

        70         80         90        100        110        120 
PLQEGDIITD AIRSNQKKTS MVPKELFGFP LIARAIPLHD ENGRVIGGVG LGTSLEESSK 

       130        140        150        160        170        180 
LHDVAESLSA VVEQTAAAIS DISESINGFS TQMSGISSQA KKVSESAGEI ADISVTVKGI 

       190        200        210        220        230        240 
SDQSNLLGLN AAIEAARAGE SGKGFSVVAD EIRKLATHSK ENVGQIDQIT KKIHSLLKGL 

       250        260        270        280 
EESIESINQH TDGQAAAVEQ ISATMQEISG SAQHLAKMAE KALEEE 

« Hide

References

« Hide 'large scale' references
[1]"A 23.4 kb segment at the 69 degrees-70 degrees region of the Bacillus subtilis genome."
Yamamoto H., Uchiyama S., Nugroho F.A., Sekiguchi J.
Microbiology 143:1317-1320(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: 168 / AC327.
[2]"The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V. expand/collapse author list , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 168.
[3]"Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses."
Serizawa M., Yamamoto H., Yamaguchi H., Fujita Y., Kobayashi K., Ogasawara N., Sekiguchi J.
Gene 329:125-136(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: INDUCTION, OPERON STRUCTURE.
Strain: 168.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D86418 Genomic DNA. Translation: BAA20108.1.
AL009126 Genomic DNA. Translation: CAB12555.1.
PIRB69814.
RefSeqNP_388617.1. NC_000964.3.

3D structure databases

ProteinModelPortalO06477.
SMRO06477. Positions 118-273.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224308.BSU07360.

Proteomic databases

PaxDbO06477.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB12555; CAB12555; BSU07360.
GeneID936102.
KEGGbsu:BSU07360.
PATRIC18973122. VBIBacSub10457_0775.

Organism-specific databases

GenoListBSU07360.

Phylogenomic databases

eggNOGCOG0840.
HOGENOMHOG000057905.
OMAMQEISGS.
OrthoDBEOG61P6P3.
PhylomeDBO06477.

Enzyme and pathway databases

BioCycBSUB:BSU07360-MONOMER.

Family and domain databases

InterProIPR004089. MCPsignal_dom.
IPR029151. Sensor-like.
[Graphical view]
PfamPF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTSM00283. MA. 1 hit.
[Graphical view]
SUPFAMSSF103190. SSF103190. 1 hit.
PROSITEPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYFMS_BACSU
AccessionPrimary (citable) accession number: O06477
Secondary accession number(s): Q797A5
Entry history
Integrated into UniProtKB/Swiss-Prot: November 3, 2009
Last sequence update: July 1, 1997
Last modified: July 9, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Bacillus subtilis

Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList