Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative sensory transducer protein YfmS

Gene

yfmS

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of methylation. Attractants increase the level of methylation while repellents decrease the level of methylation (By similarity).By similarity

GO - Molecular functioni

  1. signal transducer activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Transducer

Enzyme and pathway databases

BioCyciBSUB:BSU07360-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative sensory transducer protein YfmS
Alternative name(s):
Methyl-accepting chemotaxis protein
Gene namesi
Name:yfmS
Ordered Locus Names:BSU07360
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU07360.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 286286Putative sensory transducer protein YfmSPRO_0000388354Add
BLAST

Proteomic databases

PaxDbiO06477.

Expressioni

Inductioni

Transcriptionally regulated by SigD; part of the yfmT/yfmS operon.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi224308.BSU07360.

Structurei

3D structure databases

ProteinModelPortaliO06477.
SMRiO06477. Positions 118-273.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini68 – 286219Methyl-accepting transducerPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 methyl-accepting transducer domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000057905.
InParanoidiO06477.
OMAiMQEISGS.
OrthoDBiEOG61P6P3.
PhylomeDBiO06477.

Family and domain databases

InterProiIPR004089. MCPsignal_dom.
IPR029151. Sensor-like.
[Graphical view]
PfamiPF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTiSM00283. MA. 1 hit.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O06477-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELTINTEKE TADILDAFIK VAPYLNSLVQ DDITIGIYDT EKLLVNIPAK
60 70 80 90 100
TFSLNVKAGD PLQEGDIITD AIRSNQKKTS MVPKELFGFP LIARAIPLHD
110 120 130 140 150
ENGRVIGGVG LGTSLEESSK LHDVAESLSA VVEQTAAAIS DISESINGFS
160 170 180 190 200
TQMSGISSQA KKVSESAGEI ADISVTVKGI SDQSNLLGLN AAIEAARAGE
210 220 230 240 250
SGKGFSVVAD EIRKLATHSK ENVGQIDQIT KKIHSLLKGL EESIESINQH
260 270 280
TDGQAAAVEQ ISATMQEISG SAQHLAKMAE KALEEE
Length:286
Mass (Da):30,324
Last modified:July 1, 1997 - v1
Checksum:i29DE50D528312005
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D86418 Genomic DNA. Translation: BAA20108.1.
AL009126 Genomic DNA. Translation: CAB12555.1.
PIRiB69814.
RefSeqiNP_388617.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB12555; CAB12555; BSU07360.
GeneIDi936102.
KEGGibsu:BSU07360.
PATRICi18973122. VBIBacSub10457_0775.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D86418 Genomic DNA. Translation: BAA20108.1.
AL009126 Genomic DNA. Translation: CAB12555.1.
PIRiB69814.
RefSeqiNP_388617.1. NC_000964.3.

3D structure databases

ProteinModelPortaliO06477.
SMRiO06477. Positions 118-273.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.BSU07360.

Proteomic databases

PaxDbiO06477.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12555; CAB12555; BSU07360.
GeneIDi936102.
KEGGibsu:BSU07360.
PATRICi18973122. VBIBacSub10457_0775.

Organism-specific databases

GenoListiBSU07360.

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000057905.
InParanoidiO06477.
OMAiMQEISGS.
OrthoDBiEOG61P6P3.
PhylomeDBiO06477.

Enzyme and pathway databases

BioCyciBSUB:BSU07360-MONOMER.

Family and domain databases

InterProiIPR004089. MCPsignal_dom.
IPR029151. Sensor-like.
[Graphical view]
PfamiPF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTiSM00283. MA. 1 hit.
[Graphical view]
SUPFAMiSSF103190. SSF103190. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A 23.4 kb segment at the 69 degrees-70 degrees region of the Bacillus subtilis genome."
    Yamamoto H., Uchiyama S., Nugroho F.A., Sekiguchi J.
    Microbiology 143:1317-1320(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / AC327.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses."
    Serizawa M., Yamamoto H., Yamaguchi H., Fujita Y., Kobayashi K., Ogasawara N., Sekiguchi J.
    Gene 329:125-136(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION, OPERON STRUCTURE.
    Strain: 168.

Entry informationi

Entry nameiYFMS_BACSU
AccessioniPrimary (citable) accession number: O06477
Secondary accession number(s): Q797A5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 3, 2009
Last sequence update: July 1, 1997
Last modified: January 7, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.