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O05968

- SSRP_RICPR

UniProt

O05968 - SSRP_RICPR

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Protein
SsrA-binding protein
Gene
smpB, RP430
Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity.UniRule annotation

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
SsrA-binding protein
Gene namesi
Name:smpB
Ordered Locus Names:RP430
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000002480: Chromosome

Subcellular locationi

Cytoplasm Reviewed prediction UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 152152SsrA-binding proteinUniRule annotation
PRO_0000103018Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272947.RP430.

Structurei

3D structure databases

ProteinModelPortaliO05968.

Family & Domainsi

Sequence similaritiesi

Belongs to the SmpB family.

Phylogenomic databases

eggNOGiCOG0691.
HOGENOMiHOG000009628.
KOiK03664.
OMAiPLKIYIK.
OrthoDBiEOG6HXJ9P.

Family and domain databases

Gene3Di2.40.280.10. 1 hit.
HAMAPiMF_00023. SmpB.
InterProiIPR023620. SmpB.
IPR000037. SsrA-bd_prot.
IPR020081. SsrA-bd_prot_CS.
[Graphical view]
PfamiPF01668. SmpB. 1 hit.
[Graphical view]
ProDomiPD004488. SmpB. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF74982. SSF74982. 1 hit.
TIGRFAMsiTIGR00086. smpB. 1 hit.
PROSITEiPS01317. SSRP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O05968-1 [UniParc]FASTAAdd to Basket

« Hide

MIEDKKVIVQ NKKALFNYFI EEILEAGIVL KGSEVQSLRQ GKASIEESHA    50
SDNGHEVFLY NCHITEYEKA NRFNHSTRRP RKLLLHAKEI KKIIGRIRIK 100
GYTLVALSMY FNKKNKVKVE LGIAKGKKLY DKRAAIKEKD WKKDQSRLIR 150
QK 152
Length:152
Mass (Da):17,770
Last modified:July 1, 1997 - v1
Checksum:i09C99FE05DDF3C1D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Y11777 Genomic DNA. Translation: CAA72448.1.
AJ235271 Genomic DNA. Translation: CAA14887.1.
PIRiE71701.
RefSeqiNP_220811.1. NC_000963.1.

Genome annotation databases

EnsemblBacteriaiCAA14887; CAA14887; CAA14887.
GeneIDi883303.
KEGGirpr:RP430.
PATRICi17901641. VBIRicPro72556_0443.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Y11777 Genomic DNA. Translation: CAA72448.1 .
AJ235271 Genomic DNA. Translation: CAA14887.1 .
PIRi E71701.
RefSeqi NP_220811.1. NC_000963.1.

3D structure databases

ProteinModelPortali O05968.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272947.RP430.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAA14887 ; CAA14887 ; CAA14887 .
GeneIDi 883303.
KEGGi rpr:RP430.
PATRICi 17901641. VBIRicPro72556_0443.

Phylogenomic databases

eggNOGi COG0691.
HOGENOMi HOG000009628.
KOi K03664.
OMAi PLKIYIK.
OrthoDBi EOG6HXJ9P.

Family and domain databases

Gene3Di 2.40.280.10. 1 hit.
HAMAPi MF_00023. SmpB.
InterProi IPR023620. SmpB.
IPR000037. SsrA-bd_prot.
IPR020081. SsrA-bd_prot_CS.
[Graphical view ]
Pfami PF01668. SmpB. 1 hit.
[Graphical view ]
ProDomi PD004488. SmpB. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF74982. SSF74982. 1 hit.
TIGRFAMsi TIGR00086. smpB. 1 hit.
PROSITEi PS01317. SSRP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genomic rearrangements during evolution of the obligate intracellular parasite Rickettsia prowazekii as inferred from an analysis of 52015 bp nucleotide sequence."
    Andersson J.O., Andersson S.G.E.
    Microbiology 143:2783-2795(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: Madrid E.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Madrid E.

Entry informationi

Entry nameiSSRP_RICPR
AccessioniPrimary (citable) accession number: O05968
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 1, 1997
Last modified: May 14, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

SsrA has yet not been found in R.prowazekii, so the function of this protein is not obvious.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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