O05641 (RS5_SULAC) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S5

Gene names

Name:	rps5
Ordered Locus Names:	Saci_0577

Organism

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) [Complete proteome] [HAMAP]

Taxonomic identifier

330779 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus › Sulfolobus acidocaldarius

Protein attributes

Sequence length	214 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	With S4 and S12 plays an important role in translational accuracy By similarity. HAMAP-Rule MF_01307
Subunit structure	Part of the 30S ribosomal subunit. Contacts protein S4 By similarity.
Domain	The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity. HAMAP-Rule MF_01307
Sequence similarities	Belongs to the ribosomal protein S5P family. Contains 1 S5 DRBM domain.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 214	214	30S ribosomal protein S5 HAMAP-Rule MF_01307		PRO_0000131660
Regions
	Domain	54 – 117	64	S5 DRBM

Sequences

	Sequence		Length	Mass (Da)
	O05641 [UniParc]. Last modified July 1, 1997. Version 1. Checksum: 1F86FFAA846BD7B1	FASTA	214	23,876
	10 20 30 40 50 60 MSEEVPVIKL EDWKPRTKVG QLIKEGKINS MKELFERNLP IVEPEIVDVL LPKLRYDIVD 70 80 90 100 110 120 IGIVQKQTDA GELSRYKVLI VMGNMDGYIS YGTGKAKQLR VAIQKAIRDA KMRIIPVRRG 130 140 150 160 170 180 CGSWECTCGE SHSLPFIVSG KAGSVEVTLL PAPKGTGLVV GSVLKTFLSL AGLKDVWSRT 190 200 210 KGSTYTHENF IKAAYIALYN TYRFVTPVDW GRMK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The structure and evolution of the ribosomal proteins encoded in the spc operon of the archaeon (Crenarchaeota) Sulfolobus acidocaldarius." Yang D., Kusser I., Koepke A.K., Koop B.F., Matheson A.T. Mol. Phylogenet. Evol. 12:177-185(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770.
[2]	"The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota." Chen L., Bruegger K., Skovgaard M., Redder P., She Q., Torarinsson E., Greve B., Awayez M., Zibat A., Klenk H.-P., Garrett R.A. J. Bacteriol. 187:4992-4999(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Y07778 Genomic DNA. Translation: CAA69097.1. CP000077 Genomic DNA. Translation: AAY79969.1.
RefSeq	YP_255262.1. NC_007181.1.
3D structure databases
ProteinModelPortal	O05641.
ModBase	Search...
Protein-protein interaction databases
STRING	330779.Saci_0577.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAY79969; AAY79969; Saci_0577.
GeneID	3473215.
KEGG	sai:Saci_0577.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0098.
HOGENOM	HOG000072596.
KO	K02988.
OMA	GIKDVWT.
ProtClustDB	PRK04044.
Enzyme and pathway databases
BioCyc	SACI330779:GH9J-630-MONOMER.
Family and domain databases
Gene3D	3.30.160.20. 1 hit. 3.30.230.10. 1 hit.
HAMAP	MF_01307_A. Ribosomal_S5_A.
InterPro	IPR014720. dsRNA-bd-like_dom. IPR000851. Ribosomal_S5. IPR005324. Ribosomal_S5_C. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR005711. Ribosomal_S5_euk/arc. IPR013810. Ribosomal_S5_N. IPR018192. Ribosomal_S5_N_CS. [Graphical view]
PANTHER	PTHR13718. PTHR13718. 1 hit.
Pfam	PF00333. Ribosomal_S5. 1 hit. PF03719. Ribosomal_S5_C. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMs	TIGR01020. rpsE_arch. 1 hit.
PROSITE	PS00585. RIBOSOMAL_S5. 1 hit. PS50881. S5_DSRBD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS5_SULAC

Accession

Primary (citable) accession number: O05641
Secondary accession number(s): Q4JB60

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	July 1, 1997
Last modified:	May 1, 2013
This is version 78 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program