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Protein

Uncharacterized protein YdhK

Gene

ydhK

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU05790-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdhK
Gene namesi
Name:ydhK
Ordered Locus Names:BSU05790
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4040Sequence analysisAdd
BLAST
Chaini41 – 205165Uncharacterized protein YdhKPRO_0000359907Add
BLAST

Proteomic databases

PaxDbiO05503.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003248.

Structurei

Secondary structure

1
205
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi60 – 634Combined sources
Beta strandi87 – 904Combined sources
Helixi96 – 983Combined sources
Beta strandi102 – 11817Combined sources
Turni121 – 1233Combined sources
Beta strandi127 – 1348Combined sources
Helixi135 – 1373Combined sources
Turni140 – 1434Combined sources
Beta strandi151 – 1544Combined sources
Beta strandi166 – 18318Combined sources
Turni185 – 1873Combined sources
Beta strandi190 – 1989Combined sources
Helixi199 – 2013Combined sources
Beta strandi202 – 2043Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KY9NMR-A83-205[»]
4FIBX-ray2.00A/B/C83-202[»]
4MDWX-ray2.00A41-205[»]
ProteinModelPortaliO05503.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO05503.

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG41090UD. Bacteria.
ENOG4111PEU. LUCA.
HOGENOMiHOG000263646.
OMAiKNHKWVT.
OrthoDBiEOG6GBMDZ.
PhylomeDBiO05503.

Family and domain databases

InterProiIPR011438. DUF1541.
[Graphical view]
PfamiPF07563. DUF1541. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O05503-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAGKSYRKK MKQRRMNMKI SKYALGILML SLVFVLSACG NNNSTKESTH
60 70 80 90 100
DNHSDSSTHE EMDHSGSADV PEGLQESKNP KYKVGSQVII NTSHMKGMKG
110 120 130 140 150
AEATVTGAYD TTAYVVSYTP TNGGQRVDHH KWVIQEEIKD AGDKTLQPGD
160 170 180 190 200
QVILEASHMK GMKGATAEID SAEKTTVYMV DYTSTTSGEK VKNHKWVTED

ELSAK
Length:205
Mass (Da):22,536
Last modified:July 1, 1997 - v1
Checksum:i2F6248F2B0390348
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D88802 Genomic DNA. Translation: BAA19703.1.
AL009126 Genomic DNA. Translation: CAB12398.1.
PIRiG69784.
RefSeqiNP_388460.1. NC_000964.3.
WP_003242997.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB12398; CAB12398; BSU05790.
GeneIDi939873.
KEGGibsu:BSU05790.
PATRICi18972774. VBIBacSub10457_0608.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D88802 Genomic DNA. Translation: BAA19703.1.
AL009126 Genomic DNA. Translation: CAB12398.1.
PIRiG69784.
RefSeqiNP_388460.1. NC_000964.3.
WP_003242997.1. NC_000964.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KY9NMR-A83-205[»]
4FIBX-ray2.00A/B/C83-202[»]
4MDWX-ray2.00A41-205[»]
ProteinModelPortaliO05503.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100003248.

Proteomic databases

PaxDbiO05503.

Protocols and materials databases

DNASUi939873.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB12398; CAB12398; BSU05790.
GeneIDi939873.
KEGGibsu:BSU05790.
PATRICi18972774. VBIBacSub10457_0608.

Phylogenomic databases

eggNOGiENOG41090UD. Bacteria.
ENOG4111PEU. LUCA.
HOGENOMiHOG000263646.
OMAiKNHKWVT.
OrthoDBiEOG6GBMDZ.
PhylomeDBiO05503.

Enzyme and pathway databases

BioCyciBSUB:BSU05790-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO05503.

Family and domain databases

InterProiIPR011438. DUF1541.
[Graphical view]
PfamiPF07563. DUF1541. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence and analysis of the phoB-rrnE-groESL region of the Bacillus subtilis chromosome."
    Sadaie Y., Yata K., Fujita M., Sagai H., Itaya M., Kasahara Y., Ogasawara N.
    Microbiology 143:1861-1866(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168 / JH642.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYDHK_BACSU
AccessioniPrimary (citable) accession number: O05503
Secondary accession number(s): Q797E4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: February 17, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.