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Reviewed, UniProtKB/Swiss-Prot O05385 (RP32_BUCAI)

Last modified November 24, 2009. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    RNA polymerase sigma-32 factor
Gene names
Name: rpoH
Ordered Locus Names: BU025
OrganismBuchnera aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) [Complete proteome] [HAMAP]
Taxonomic identifier118099 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length284 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters By similarity.

Sequence similarities

Belongs to the sigma-70 factor family. Sigma-32 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 284284RNA polymerase sigma-32 factor
PRO_0000093951

Regions

DNA binding253 – 27220H-T-H motif By similarity
Motif77 – 9014Polymerase core binding Potential

Sequences

Sequence LengthMass (Da)Tools
O05385-1 [UniParc].

Last modified July 1, 1997. Version 1.
Checksum: 8BEE7BC9E0F18300

FASTA28432,937
        10         20         30         40         50         60 
MINKVQILSV TPPGNLDAYI RIANLWPMLS IEEEKKLTKR LRYNGDLDAA KTLILSHLRF 

        70         80         90        100        110        120 
VIHISRNYSG YGLLQSDLIQ EGNIGLMKAV RRFNPEIGVR LVSFAVHWIK SEIHEYVLRN 

       130        140        150        160        170        180 
WRIVKVATTK SQRKLFFNLR KTKKRLGWFN EEEIQIVARE LGVSSRDVRE MESRMSAQDV 

       190        200        210        220        230        240 
AFNPSPEEHC DSKTNSSIQY LQDKTSNFAN GVEQDNWEEH AANKLSSALL RLDERSRHII 

       250        260        270        280 
HARWLDKNKK NTLQNIANNY GISAERVRQL EKNAMKKLKL AIEA 

« Hide

References

« Hide 'large scale' references
[1]"Expression and control of an operon from an intracellular symbiont which is homologous to the groE operon."
Sato S., Ishikawa H.
J. Bacteriol. 179:2300-2304(1997) [PubMed: 9079916] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
Nature 407:81-86(2000) [PubMed: 10993077] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tokyo 1998.

Cross-references

Sequence databases

U35400 Genomic DNA. Translation: AAB51433.1.
BA000003 Genomic DNA. Translation: BAB12752.1.
RefSeqNP_239866.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID1109533.
GenomeReviewsGene locus BU025 in contig BA000003_GR.
KEGGbuc:BU025.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMO05385.
OMASEINRFP

Enzyme and pathway databases

BioCycBSP107806:BU025-MON.

Family and domain databases

InterProIPR014284. RNA_pol_sigma-70.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012759. RNA_pol_sigma_RpoH_proteobac.
IPR011991. Wing_hlx_DNA_bd.
[Graphical view]
Gene3DG3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
PfamPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
TIGRFAMsTIGR02392. rpoH_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRP32_BUCAI
AccessionPrimary (citable) accession number: O05385
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: July 1, 1997
Last modified: November 24, 2009
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Buchnera aphidicola (subsp. Acyrthosiphon pisum)

Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents