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Protein

Probable UPF0122 protein

Gene
N/A
Organism
Mycoplasma mycoides
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein (By similarity).By similarity

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: InterPro

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Probable UPF0122 protein
Alternative name(s):
p13
OrganismiMycoplasma mycoides
Taxonomic identifieri2102 [NCBI]
Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 113113Probable UPF0122 proteinPRO_0000211872Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0122 family.Curated

Phylogenomic databases

eggNOGiCOG2739.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00245. UPF0122.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR007394. UPF0122.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04297. UPF0122. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.

Sequencei

Sequence statusi: Complete.

O05290-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLKNNLLEK TLELSELFKI YKELLTDKQK QYFELYIDED LSLSEIADEF
60 70 80 90 100
NISKTAVYDS ISKTSKLLFS LETKLHLKQK QDLLISLINK IETNQIDEKQ
110
FIKSLKEVIW WKY
Length:113
Mass (Da):13,538
Last modified:July 1, 1997 - v1
Checksum:i3564846C55149BB3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y10137 Genomic DNA. Translation: CAA71225.1.
PIRiJC5411.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y10137 Genomic DNA. Translation: CAA71225.1.
PIRiJC5411.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiCOG2739.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00245. UPF0122.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR007394. UPF0122.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04297. UPF0122. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "A 13-kDa protein with a helix-turn-helix motif is encoded by bacterial operons related to the SRP pathway."
    Samuelsson T., Macao B., Boelske G.
    Biochem. Biophys. Res. Commun. 231:839-843(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiP13_MYCMY
AccessioniPrimary (citable) accession number: O05290
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: July 1, 1997
Last modified: April 1, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.