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Protein

Uncharacterized HTH-type transcriptional regulator YwrC

Gene

ywrC

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi31 – 50H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU36110-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YwrC
Gene namesi
Name:ywrC
Ordered Locus Names:BSU36110
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003605591 – 158Uncharacterized HTH-type transcriptional regulator YwrCAdd BLAST158

Proteomic databases

PaxDbiO05217.
PRIDEiO05217.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019526.

Structurei

3D structure databases

ProteinModelPortaliO05217.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 73HTH asnC-typePROSITE-ProRule annotationAdd BLAST62

Sequence similaritiesi

Contains 1 HTH asnC-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG1522. LUCA.
HOGENOMiHOG000115326.
InParanoidiO05217.
OMAiQMLIKRY.
PhylomeDBiO05217.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProiIPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC/Lrp_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01037. AsnC_trans_reg. 1 hit.
PF13404. HTH_AsnC-type. 1 hit.
[Graphical view]
PRINTSiPR00033. HTHASNC.
SMARTiSM00344. HTH_ASNC. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54909. SSF54909. 1 hit.
PROSITEiPS50956. HTH_ASNC_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O05217-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHEYQIPNL VLDETDKQIL TILHEEGRIS YTDLGKRVDL SRVAVQARIN
60 70 80 90 100
QLIEAGVIEK FTAVINPAKI GIHVSVFFNV EVEPQFLEEV ALKLEEEPAV
110 120 130 140 150
TSLYHMTGPS KLHMHGIFTN DQEMEEFLTK RLYPLRGVVS VDCQMLIKRY

KSRMGMKL
Length:158
Mass (Da):18,127
Last modified:July 1, 1997 - v1
Checksum:iC9527A362A313D0F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z93767 Genomic DNA. Translation: CAB07798.1.
AL009126 Genomic DNA. Translation: CAB15628.1.
PIRiE70068.
RefSeqiNP_391492.1. NC_000964.3.
WP_003242900.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15628; CAB15628; BSU36110.
GeneIDi936886.
KEGGibsu:BSU36110.
PATRICi18979240. VBIBacSub10457_3782.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z93767 Genomic DNA. Translation: CAB07798.1.
AL009126 Genomic DNA. Translation: CAB15628.1.
PIRiE70068.
RefSeqiNP_391492.1. NC_000964.3.
WP_003242900.1. NZ_JNCM01000034.1.

3D structure databases

ProteinModelPortaliO05217.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019526.

Proteomic databases

PaxDbiO05217.
PRIDEiO05217.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15628; CAB15628; BSU36110.
GeneIDi936886.
KEGGibsu:BSU36110.
PATRICi18979240. VBIBacSub10457_3782.

Phylogenomic databases

eggNOGiCOG1522. LUCA.
HOGENOMiHOG000115326.
InParanoidiO05217.
OMAiQMLIKRY.
PhylomeDBiO05217.

Enzyme and pathway databases

BioCyciBSUB:BSU36110-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProiIPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC/Lrp_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01037. AsnC_trans_reg. 1 hit.
PF13404. HTH_AsnC-type. 1 hit.
[Graphical view]
PRINTSiPR00033. HTHASNC.
SMARTiSM00344. HTH_ASNC. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54909. SSF54909. 1 hit.
PROSITEiPS50956. HTH_ASNC_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYWRC_BACSU
AccessioniPrimary (citable) accession number: O05217
Secondary accession number(s): Q795C3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: July 1, 1997
Last modified: November 2, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.