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Protein

Pathogenesis-related genes transcriptional activator PTI6

Gene

PTI6

Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi97 – 15458AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Plant defense, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Pathogenesis-related genes transcriptional activator PTI6
Alternative name(s):
PTO-interacting protein 6
Gene namesi
Name:PTI6
OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
Taxonomic identifieri4081 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon
Proteomesi
  • UP000004994 Componenti: Chromosome 6

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 248248Pathogenesis-related genes transcriptional activator PTI6PRO_0000112568Add
BLAST

Proteomic databases

PaxDbiO04682.

Interactioni

Subunit structurei

Interacts with the Pto kinase.

Protein-protein interaction databases

STRINGi4081.Solyc06g082590.1.1.

Structurei

3D structure databases

ProteinModelPortaliO04682.
SMRiO04682. Positions 96-155.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi81 – 9717Nuclear localization signalAdd
BLAST

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IYB6. Eukaryota.
ENOG410YQGI. LUCA.
InParanoidiO04682.
KOiK13434.
OMAiVTEINLM.
OrthoDBiEOG09360MT1.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR017392. AP2/ERF-transcript_factor.
IPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PANTHERiPTHR31194. PTHR31194. 1 hit.
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PIRSFiPIRSF038123. PTI6. 1 hit.
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O04682-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTENSVPVIK FTQHIVTTNK HVFSEHNEKS NSELQRVVRI ILTDADATDS
60 70 80 90 100
SDDEGRNTVR RVKRHVTEIN LMPSTKSIGD RKRRSVSPDS DVTRRKKFRG
110 120 130 140 150
VRQRPWGRWA AEIRDPTRGK RVWLGTYDTP EEAAVVYDKA AVKLKGPDAV
160 170 180 190 200
TNFPVSTTAE VTVTVTETET ESVADGGDKS ENDVALSPTS VLCDNDFAPF
210 220 230 240
DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGDEFGEFDF DDFALEAR
Length:248
Mass (Da):27,913
Last modified:July 1, 1997 - v1
Checksum:i115BD44DDEB1B992
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89257 mRNA. Translation: AAC49741.1.
PIRiT07728.
RefSeqiNP_001233991.1. NM_001247062.2.
UniGeneiLes.3574.

Genome annotation databases

EnsemblPlantsiSolyc06g082590.1.1; Solyc06g082590.1.1; Solyc06g082590.1.
GeneIDi544043.
GrameneiSolyc06g082590.1.1; Solyc06g082590.1.1; Solyc06g082590.1.
KEGGisly:544043.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U89257 mRNA. Translation: AAC49741.1.
PIRiT07728.
RefSeqiNP_001233991.1. NM_001247062.2.
UniGeneiLes.3574.

3D structure databases

ProteinModelPortaliO04682.
SMRiO04682. Positions 96-155.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4081.Solyc06g082590.1.1.

Proteomic databases

PaxDbiO04682.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSolyc06g082590.1.1; Solyc06g082590.1.1; Solyc06g082590.1.
GeneIDi544043.
GrameneiSolyc06g082590.1.1; Solyc06g082590.1.1; Solyc06g082590.1.
KEGGisly:544043.

Phylogenomic databases

eggNOGiENOG410IYB6. Eukaryota.
ENOG410YQGI. LUCA.
InParanoidiO04682.
KOiK13434.
OMAiVTEINLM.
OrthoDBiEOG09360MT1.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR017392. AP2/ERF-transcript_factor.
IPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PANTHERiPTHR31194. PTHR31194. 1 hit.
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PIRSFiPIRSF038123. PTI6. 1 hit.
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPTI6_SOLLC
AccessioniPrimary (citable) accession number: O04682
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: July 1, 1997
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.