O04510 (O04510_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
F21M12.27 protein EMBL AAB60741.1

Submitted name:
Rhamnogalacturonate lyase-like protein EMBL AEE28510.1

Gene names

Name:	F21M12.27 EMBL AAB60741.1
Ordered Locus Names:	At1g09880 TAIR At1g09880
ORF Names:	AT1G09880 EMBL AEE28510.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL AAB60741.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	631 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL AEE28510.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O04510 [UniParc]. Last modified July 1, 1997. Version 1. Checksum: 9C90526E231BB508	FASTA	631	72,389
	10 20 30 40 50 60 MENRFLQLTL SNPEGFVTGI QYNGIDNVLA YYTNKEYDRG YWDVVWNFPG KKAKKTKGTL 70 80 90 100 110 120 DRIEATKMEV ITQNDEKIEL SFTRTWNTSS TTAVPVNIDK RFVMLQNSSG FYSYAIFERL 130 140 150 160 170 180 QGWPAVELDN MRLVFKLNKK KFHYMAISDD RQRYMPVPDD RVPPRGQPLA YPEAVQLLDP 190 200 210 220 230 240 IEPEFKGEVD DKYEYSMESK DIKVHGWIST NDSVGFWQIT PSNEFRSAGP LKQFLGSHVG 250 260 270 280 290 300 PTNLAVFHST HYVGADLIMS FKNGEAWKKV FGPVFIYLNS FPKGVDPLLL WHEAKNQTKI 310 320 330 340 350 360 EEEKWPYNFT ASDDFPASDQ RGSVSGRLLV RDRFISSEDI PANGSYVGLA APGDVGSWQR 370 380 390 400 410 420 ECKGYQFWSK ADENGSFSIN NVRSGRYNLY AFAPGFIGDY HNDTVFDISP GSKISLGDLV 430 440 450 460 470 480 YEPPRDGSTL WEIGVPDRSA AEFYIPDPNP SFVNKLYLNH SDKYRQYGLW ERYSELYPDE 490 500 510 520 530 540 DMVYNVDIDD YSKNWFFMQV TRKQANGGYK GTTWQIRFQF DDKMKNVTGN FKLRIALATS 550 560 570 580 590 600 NVAELQVRVN DLSADPPLFR TEQIGRDNTI ARHGIHGLYW LYSVNVPAAS LHVGNNTIYL 610 620 630 TQALATSPFQ GLMYDYIRLE YPDSINYITR S

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	Theologis Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"The sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1." Vysotskaia V.S., Osborne B.I., Toriumi M., Yu G., Oji O., Shen Y.K., Araujo R., Au M., Buehler E., Conway A.B., Conway A.R., Dewar K., Feng J., Kim C., Kurtz D., Li Y., Shinn P., Sun H. , Davis R.W., Ecker J.R., Federspiel N.A., Theologis A. Submitted (MAY-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC000132 Genomic DNA. Translation: AAB60741.1. CP002684 Genomic DNA. Translation: AEE28510.1.
IPI	IPI00540834.
PIR	B86233.
RefSeq	NP_172459.1. NM_100862.1.
UniGene	At.51541.
3D structure databases
ProteinModelPortal	O04510.
ModBase	Search...
Protein family/group databases
CAZy	PL4. Polysaccharide Lyase Family 4.
Proteomic databases
PRIDE	O04510.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G09880.1; AT1G09880.1; AT1G09880.
GeneID	837520.
GenomeReviews	Gene locus AT1G09880 in contig CT485782_GR.
KEGG	ath:AT1G09880.
NMPDR	fig|3702.1.peg.1222.
Organism-specific databases
TAIR	At1g09880.
Phylogenomic databases
eggNOG	euNOG08918.
GeneTree	EPGT00050000014513.
HOGENOM	HBG318809.
InParanoid	O04510.
OMA	HVGPTNL.
PhylomeDB	O04510.
ProtClustDB	CLSN2912685.
Gene expression databases
Genevestigator	O04510.
Family and domain databases
InterPro	IPR013784. Carb-bd-like_fold. IPR008979. Galactose-bd-like. IPR010325. Rhamnogal_lyase. [Graphical view]
Pfam	PF06045. Rhamnogal_lyase. 1 hit. [Graphical view]
SUPFAM	SSF49452. CBD_4. 1 hit. SSF49785. Gal_bind_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

O04510_ARATH

Accession

Primary (citable) accession number: O04510

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 1997
Last sequence update:	July 1, 1997
Last modified:	January 25, 2012
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)