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Protein

Pentatricopeptide repeat-containing protein At1g09820

Gene

At1g09820

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g09820
Gene namesi
Ordered Locus Names:At1g09820
ORF Names:F21M12.21
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G09820
TAIRilocus:2024301 AT1G09820

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003427681 – 606Pentatricopeptide repeat-containing protein At1g09820Add BLAST606

Proteomic databases

PaxDbiO04504

Expressioni

Gene expression databases

ExpressionAtlasiO04504 baseline and differential
GenevisibleiO04504 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G09820.1

Structurei

3D structure databases

ProteinModelPortaliO04504
SMRiO04504
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati152 – 186PPR 1Add BLAST35
Repeati187 – 221PPR 2Add BLAST35
Repeati222 – 256PPR 3Add BLAST35
Repeati257 – 294PPR 4Add BLAST38
Repeati295 – 329PPR 5Add BLAST35
Repeati330 – 364PPR 6Add BLAST35
Repeati365 – 399PPR 7Add BLAST35
Repeati400 – 434PPR 8Add BLAST35
Repeati435 – 465PPR 9Add BLAST31
Repeati469 – 503PPR 10Add BLAST35
Repeati504 – 534PPR 11Add BLAST31
Repeati540 – 574PPR 12Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000243970
InParanoidiO04504
OMAiPDIEGHL
OrthoDBiEOG093604Z0
PhylomeDBiO04504

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 1 hit
PF12854 PPR_1, 2 hits
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 11 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

O04504-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI
60 70 80 90 100
EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
110 120 130 140 150
LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC
160 170 180 190 200
VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
210 220 230 240 250
ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK
260 270 280 290 300
VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
310 320 330 340 350
ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA
360 370 380 390 400
ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
410 420 430 440 450
TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG
460 470 480 490 500
NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
510 520 530 540 550
LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG
560 570 580 590 600
YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF

NVSTKS
Length:606
Mass (Da):68,047
Last modified:July 1, 1997 - v1
Checksum:i8E2541798A514105
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000132 Genomic DNA Translation: AAB60736.1
CP002684 Genomic DNA Translation: AEE28499.1
PIRiD86232
RefSeqiNP_172453.1, NM_100856.3
UniGeneiAt.66804

Genome annotation databases

EnsemblPlantsiAT1G09820.1; AT1G09820.1; AT1G09820
GeneIDi837514
GrameneiAT1G09820.1; AT1G09820.1; AT1G09820
KEGGiath:AT1G09820

Similar proteinsi

Entry informationi

Entry nameiPPR27_ARATH
AccessioniPrimary (citable) accession number: O04504
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: July 1, 1997
Last modified: May 23, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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