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Protein

Pentatricopeptide repeat-containing protein At1g09820

Gene

At1g09820

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g09820
Gene namesi
Ordered Locus Names:At1g09820
ORF Names:F21M12.21
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G09820.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 606606Pentatricopeptide repeat-containing protein At1g09820PRO_0000342768Add
BLAST

Proteomic databases

PaxDbiO04504.
PRIDEiO04504.

Expressioni

Gene expression databases

GenevisibleiO04504. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G09820.1.

Structurei

3D structure databases

ProteinModelPortaliO04504.
SMRiO04504. Positions 79-126, 152-584.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati152 – 18635PPR 1Add
BLAST
Repeati187 – 22135PPR 2Add
BLAST
Repeati222 – 25635PPR 3Add
BLAST
Repeati257 – 29438PPR 4Add
BLAST
Repeati295 – 32935PPR 5Add
BLAST
Repeati330 – 36435PPR 6Add
BLAST
Repeati365 – 39935PPR 7Add
BLAST
Repeati400 – 43435PPR 8Add
BLAST
Repeati435 – 46531PPR 9Add
BLAST
Repeati469 – 50335PPR 10Add
BLAST
Repeati504 – 53431PPR 11Add
BLAST
Repeati540 – 57435PPR 12Add
BLAST

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 12 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000243970.
InParanoidiO04504.
OMAiNRITYEI.
PhylomeDBiO04504.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 1 hit.
PF12854. PPR_1. 2 hits.
PF13041. PPR_2. 4 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 11 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O04504-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI
60 70 80 90 100
EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
110 120 130 140 150
LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC
160 170 180 190 200
VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
210 220 230 240 250
ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK
260 270 280 290 300
VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
310 320 330 340 350
ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA
360 370 380 390 400
ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
410 420 430 440 450
TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG
460 470 480 490 500
NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
510 520 530 540 550
LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG
560 570 580 590 600
YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF

NVSTKS
Length:606
Mass (Da):68,047
Last modified:July 1, 1997 - v1
Checksum:i8E2541798A514105
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000132 Genomic DNA. Translation: AAB60736.1.
CP002684 Genomic DNA. Translation: AEE28499.1.
PIRiD86232.
RefSeqiNP_172453.1. NM_100856.2.
UniGeneiAt.66804.

Genome annotation databases

EnsemblPlantsiAT1G09820.1; AT1G09820.1; AT1G09820.
GeneIDi837514.
GrameneiAT1G09820.1; AT1G09820.1; AT1G09820.
KEGGiath:AT1G09820.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000132 Genomic DNA. Translation: AAB60736.1.
CP002684 Genomic DNA. Translation: AEE28499.1.
PIRiD86232.
RefSeqiNP_172453.1. NM_100856.2.
UniGeneiAt.66804.

3D structure databases

ProteinModelPortaliO04504.
SMRiO04504. Positions 79-126, 152-584.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G09820.1.

Proteomic databases

PaxDbiO04504.
PRIDEiO04504.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G09820.1; AT1G09820.1; AT1G09820.
GeneIDi837514.
GrameneiAT1G09820.1; AT1G09820.1; AT1G09820.
KEGGiath:AT1G09820.

Organism-specific databases

TAIRiAT1G09820.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000243970.
InParanoidiO04504.
OMAiNRITYEI.
PhylomeDBiO04504.

Miscellaneous databases

PROiO04504.

Gene expression databases

GenevisibleiO04504. AT.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 1 hit.
PF12854. PPR_1. 2 hits.
PF13041. PPR_2. 4 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 11 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPPR27_ARATH
AccessioniPrimary (citable) accession number: O04504
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: July 1, 1997
Last modified: February 17, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.