O04326 (O04326_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Gb|AAB63646.1 EMBL BAB01270.1

Submitted name:
Nuclear pore complex protein Nup53 EMBL AEE75796.1
Submitted name:
Putative uncharacterized protein At3g16310 EMBL AAN86172.1
Submitted name:
T02O04.20 protein EMBL AAB63646.1

Gene names

Name:	T02O04.20 EMBL AAB63646.1
Ordered Locus Names:	At3g16310 TAIR At3g16310
ORF Names:	AT3G16310 EMBL AEE75796.1

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	329 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	transmembrane transport Inferred from electronic annotation. Source: InterPro
Cellular_component	nuclear membrane Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O04326 [UniParc]. Last modified July 1, 1997. Version 1. Checksum: 55BB007762A65D05	FASTA	329	35,430
	10 20 30 40 50 60 MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY 70 80 90 100 110 120 TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT PGKGKLEASP SFSLLNAQQS 130 140 150 160 170 180 QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT 190 200 210 220 230 240 GNLDEEEWVT VYGFSPGDTN LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN 250 260 270 280 290 300 KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS 310 320 AFSPQPSGGA MASPSKSMVS KFFDLMFGV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence." Rounsley S.D., Lin X., Ketchum K.A., Phillips C.A., Brandon R.C., Fuhrmann J.L., White O., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C. Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	Sato S., Nakamura Y., Kaneko T., Kato T., Asamizu E., Tabata S. Submitted (FEB-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones." Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S. DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[4]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[5]	"Full-length messenger RNA sequences greatly improve genome annotation." Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L. Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[6]	Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	"Arabidopsis Open Reading Frame (ORF) Clones." Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Chen H., Cheuk R., Jones T., Kim C.J. , Nguyen M., Palm C.J., Shinn P., Southwick A., Tripp M.G., Wu T., Davis R.W., Ecker J.R., Theologis A. Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[8]	"Features of Arabidopsis genes and genome discovered using full-length cDNAs." Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A. Plant Mol. Biol. 60:71-87(2006) Cited for: NUCLEOTIDE SEQUENCE.
[9]	Arabidopsis TAIR10 Release Swarbreck D., Lamesch P., Wilks C., Huala E. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[10]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC001645 Genomic DNA. Translation: AAB63646.1. AY086937 mRNA. Translation: AAM64501.1. BT002339 mRNA. Translation: AAN86172.1. CP002686 Genomic DNA. Translation: AEE75796.1. AB023046 Genomic DNA. Translation: BAB01270.1.
IPI	IPI00520235.
RefSeq	NP_566542.1. NM_112502.4.
UniGene	At.6084.
3D structure databases
SMR	O04326. Positions 185-256.
ModBase	Search...
Protein-protein interaction databases
IntAct	O04326. 72 interactions.
STRING	3702.AT3G16310.1-P.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G16310.1; AT3G16310.1; AT3G16310.
GeneID	820878.
KEGG	ath:AT3G16310.
Organism-specific databases
TAIR	At3g16310.
Phylogenomic databases
eggNOG	NOG253574.
HOGENOM	HOG000005837.
InParanoid	O04326.
KO	K14313.
OMA	HILYQNR.
ProtClustDB	CLSN2688444.
Gene expression databases
Genevestigator	O04326.
Family and domain databases
InterPro	IPR017389. Nucleoporin_NUP53. IPR007846. RRM_NUP35_dom. [Graphical view]
Pfam	PF05172. Nup35_RRM. 1 hit. [Graphical view]
PIRSF	PIRSF038119. Nucleoporin_NUP53. 1 hit.
PROSITE	PS51472. RRM_NUP35. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O04326_ARATH

Accession

Primary (citable) accession number: O04326

Entry history

Integrated into UniProtKB/TrEMBL:	July 1, 1997
Last sequence update:	July 1, 1997
Last modified:	May 1, 2013
This is version 78 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)