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O04326 (O04326_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 91. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Nucleoporin NUP53 PIRNR PIRNR038119
Alternative name(s):
Nucleoporin Nup35 PIRNR PIRNR038119
Gene names
Name:T02O04.20 EMBL AAB63646.1
Ordered Locus Names:At3g16310 EMBL AEE75796.1 TAIR AT3G16310
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length329 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Functions as a component of the nuclear pore complex (NPC) By similarity. PIRNR PIRNR038119

Subcellular location

Nucleus By similarity PIRNR PIRNR038119.

Sequence similarities

Belongs to the Nup53 family. PIRNR PIRNR038119

Sequences

Sequence LengthMass (Da)Tools
O04326 [UniParc].

Last modified July 1, 1997. Version 1.
Checksum: 55BB007762A65D05

FASTA32935,430
        10         20         30         40         50         60 
MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY 

        70         80         90        100        110        120 
TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT PGKGKLEASP SFSLLNAQQS 

       130        140        150        160        170        180 
QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT 

       190        200        210        220        230        240 
GNLDEEEWVT VYGFSPGDTN LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN 

       250        260        270        280        290        300 
KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS 

       310        320 
AFSPQPSGGA MASPSKSMVS KFFDLMFGV 

« Hide

References

« Hide 'large scale' references
[1]"Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence."
Rounsley S.D., Lin X., Ketchum K.A., Phillips C.A., Brandon R.C., Fuhrmann J.L., White O., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C.
Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
Nakamura Y.
DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]"Full-length messenger RNA sequences greatly improve genome annotation."
Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Chen H., Cheuk R., Jones T., Kim C.J. expand/collapse author list , Nguyen M., Palm C.J., Shinn P., Southwick A., Tripp M.G., Wu T., Davis R.W., Ecker J.R., Theologis A.
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]"Features of Arabidopsis genes and genome discovered using full-length cDNAs."
Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
Plant Mol. Biol. 60:71-87(2006)
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana."
Jones A.M., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E., Rathjen J.P., Peck S.C.
J. Proteomics 72:439-451(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[9]"Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks."
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S.
Plant Physiol. 150:889-903(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[10]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC001645 Genomic DNA. Translation: AAB63646.1.
AY086937 mRNA. Translation: AAM64501.1.
BT002339 mRNA. Translation: AAN86172.1.
CP002686 Genomic DNA. Translation: AEE75796.1.
AB023046 Genomic DNA. Translation: BAB01270.1.
RefSeqNP_566542.1. NM_112502.4.
UniGeneAt.6084.

3D structure databases

ProteinModelPortalO04326.
SMRO04326. Positions 185-256.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActO04326. 72 interactions.
STRING3702.AT3G16310.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G16310.1; AT3G16310.1; AT3G16310.
GeneID820878.
KEGGath:AT3G16310.

Organism-specific databases

TAIRAT3G16310.

Phylogenomic databases

eggNOGNOG253574.
HOGENOMHOG000005837.
InParanoidO04326.
KOK14313.
OMARQSLFFQ.
PhylomeDBO04326.

Gene expression databases

GenevestigatorO04326.

Family and domain databases

InterProIPR017389. Nucleoporin_NUP53.
IPR007846. RRM_NUP35_dom.
[Graphical view]
PfamPF05172. Nup35_RRM. 1 hit.
[Graphical view]
PIRSFPIRSF038119. Nucleoporin_NUP53. 1 hit.
PROSITEPS51472. RRM_NUP35. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameO04326_ARATH
AccessionPrimary (citable) accession number: O04326
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: July 9, 2014
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)