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O04326

- O04326_ARATH

UniProt

O04326 - O04326_ARATH

Protein

Nucleoporin NUP53

Gene

T02O04.20

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 93 (01 Oct 2014)
      Sequence version 1 (01 Jul 1997)
      Previous versions | rss
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    Functioni

    Functions as a component of the nuclear pore complex (NPC).UniRule annotation

    GO - Biological processi

    1. mRNA transport Source: UniProtKB-KW
    2. protein transport Source: UniProtKB-KW
    3. transmembrane transport Source: InterPro

    Keywords - Biological processi

    mRNA transport, Protein transport, Translocation, Transport

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Nucleoporin NUP53UniRule annotation
    Alternative name(s):
    Nucleoporin Nup35UniRule annotation
    Gene namesi
    Name:T02O04.20Imported
    Ordered Locus Names:At3g16310Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G16310.

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nuclear membrane Source: InterPro
    2. nuclear pore Source: UniProtKB-KW

    Keywords - Cellular componenti

    Nuclear pore complexUniRule annotation, Nucleus

    Expressioni

    Gene expression databases

    GenevestigatoriO04326.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT3G16310.1-P.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Nup53 family.UniRule annotation

    Phylogenomic databases

    eggNOGiNOG253574.
    HOGENOMiHOG000005837.
    InParanoidiO04326.
    KOiK14313.
    OMAiRQSLFFQ.

    Family and domain databases

    InterProiIPR017389. Nucleoporin_NUP53.
    IPR007846. RRM_NUP35_dom.
    [Graphical view]
    PfamiPF05172. Nup35_RRM. 1 hit.
    [Graphical view]
    PIRSFiPIRSF038119. Nucleoporin_NUP53. 1 hit.
    PROSITEiPS51472. RRM_NUP35. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    O04326-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG    50
    GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT 100
    PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV 150
    EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN 200
    LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV 250
    IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS 300
    AFSPQPSGGA MASPSKSMVS KFFDLMFGV 329
    Length:329
    Mass (Da):35,430
    Last modified:July 1, 1997 - v1
    Checksum:i55BB007762A65D05
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC001645 Genomic DNA. Translation: AAB63646.1.
    AY086937 mRNA. Translation: AAM64501.1.
    BT002339 mRNA. Translation: AAN86172.1.
    CP002686 Genomic DNA. Translation: AEE75796.1.
    AB023046 Genomic DNA. Translation: BAB01270.1.
    RefSeqiNP_566542.1. NM_112502.4.
    UniGeneiAt.6084.

    Genome annotation databases

    EnsemblPlantsiAT3G16310.1; AT3G16310.1; AT3G16310.
    GeneIDi820878.
    KEGGiath:AT3G16310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC001645 Genomic DNA. Translation: AAB63646.1 .
    AY086937 mRNA. Translation: AAM64501.1 .
    BT002339 mRNA. Translation: AAN86172.1 .
    CP002686 Genomic DNA. Translation: AEE75796.1 .
    AB023046 Genomic DNA. Translation: BAB01270.1 .
    RefSeqi NP_566542.1. NM_112502.4.
    UniGenei At.6084.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G16310.1-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G16310.1 ; AT3G16310.1 ; AT3G16310 .
    GeneIDi 820878.
    KEGGi ath:AT3G16310.

    Organism-specific databases

    TAIRi AT3G16310.

    Phylogenomic databases

    eggNOGi NOG253574.
    HOGENOMi HOG000005837.
    InParanoidi O04326.
    KOi K14313.
    OMAi RQSLFFQ.

    Gene expression databases

    Genevestigatori O04326.

    Family and domain databases

    InterProi IPR017389. Nucleoporin_NUP53.
    IPR007846. RRM_NUP35_dom.
    [Graphical view ]
    Pfami PF05172. Nup35_RRM. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF038119. Nucleoporin_NUP53. 1 hit.
    PROSITEi PS51472. RRM_NUP35. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence."
      Rounsley S.D., Lin X., Ketchum K.A., Phillips C.A., Brandon R.C., Fuhrmann J.L., White O., Kerlavage A.R., Adams M.D., Somerville C.R., Venter J.C.
      Submitted (JUL-1997) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
      Nakamura Y.
      DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    3. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    4. "Full-length messenger RNA sequences greatly improve genome annotation."
      Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
      Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    5. Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    6. Cited for: NUCLEOTIDE SEQUENCE.
    7. "Features of Arabidopsis genes and genome discovered using full-length cDNAs."
      Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
      Plant Mol. Biol. 60:71-87(2006)
      Cited for: NUCLEOTIDE SEQUENCE.
    8. "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana."
      Jones A.M., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E., Rathjen J.P., Peck S.C.
      J. Proteomics 72:439-451(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    9. "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks."
      Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S.
      Plant Physiol. 150:889-903(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    10. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    11. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiO04326_ARATH
    AccessioniPrimary (citable) accession number: O04326
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 1, 1997
    Last sequence update: July 1, 1997
    Last modified: October 1, 2014
    This is version 93 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3