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Protein

Nuclear pore complex protein NUP35

Gene

NUP35

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processmRNA transport, Protein transport, Translocation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear pore complex protein NUP351 Publication
Alternative name(s):
Nucleoporin 35
Gene namesi
Name:NUP351 Publication
Ordered Locus Names:At3g16310Imported
ORF Names:T02O04.20Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G16310
TAIRilocus:2094937 AT3G16310

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nuclear pore complex, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004310821 – 329Nuclear pore complex protein NUP35Add BLAST329

Proteomic databases

PaxDbiO04326

PTM databases

iPTMnetiO04326

Expressioni

Gene expression databases

ExpressionAtlasiO04326 baseline and differential
GenevisibleiO04326 AT

Interactioni

Subunit structurei

Part of the nuclear pore complex (NPC). The NPC has an eight-fold symmetrical structure comprising a central transport channel and two rings, the cytoplasmic and nuclear rings, to which eight filaments are attached. The cytoplasmic filaments have loose ends, while the nuclear filaments are joined in a distal ring, forming a nuclear basket. NPCs are highly dynamic in configuration and composition, and can be devided in 3 subcomplexes, the NUP62 subcomplex, the NUP107-160 subcomplex and the NUP93 subcomplex, containing approximately 30 different nucleoporin proteins.1 Publication

Protein-protein interaction databases

BioGridi6212, 63 interactors
IntActiO04326, 72 interactors
STRINGi3702.AT3G16310.1

Structurei

3D structure databases

ProteinModelPortaliO04326
SMRiO04326
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini183 – 264RRM Nup35-typePROSITE-ProRule annotationAdd BLAST82

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi55 – 58Poly-ProSequence analysis4

Sequence similaritiesi

Belongs to the Nup35 family.Curated

Phylogenomic databases

eggNOGiKOG4285 Eukaryota
ENOG4111ARE LUCA
HOGENOMiHOG000005837
InParanoidiO04326
KOiK14313
OMAiHPPFLRD
OrthoDBiEOG09360FAY
PhylomeDBiO04326

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR017389 Nucleoporin_NUP53
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR007846 RRM_NUP35_dom
PfamiView protein in Pfam
PF05172 Nup35_RRM, 1 hit
PIRSFiPIRSF038119 Nucleoporin_NUP53, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS51472 RRM_NUP35, 1 hit

Sequencei

Sequence statusi: Complete.

O04326-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG
60 70 80 90 100
GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
110 120 130 140 150
PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV
160 170 180 190 200
EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
210 220 230 240 250
LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV
260 270 280 290 300
IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
310 320
AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Length:329
Mass (Da):35,430
Last modified:July 1, 1997 - v1
Checksum:i55BB007762A65D05
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti329V → A in AAL49847 (PubMed:14593172).1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB023046 Genomic DNA Translation: BAB01270.1
AC001645 Genomic DNA Translation: AAB63646.1
CP002686 Genomic DNA Translation: AEE75796.1
AY086937 mRNA Translation: AAM64501.1
BT002339 mRNA Translation: AAN86172.1
AY070444 mRNA Translation: AAL49847.1
RefSeqiNP_566542.1, NM_112502.5
UniGeneiAt.6084

Genome annotation databases

EnsemblPlantsiAT3G16310.1; AT3G16310.1; AT3G16310
GeneIDi820878
GrameneiAT3G16310.1; AT3G16310.1; AT3G16310
KEGGiath:AT3G16310

Similar proteinsi

Entry informationi

Entry nameiNUP35_ARATH
AccessioniPrimary (citable) accession number: O04326
Secondary accession number(s): Q8VYL9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 26, 2014
Last sequence update: July 1, 1997
Last modified: April 25, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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