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Protein

Uncharacterized protein At2g39920

Gene

At2g39920

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • response to cadmium ion Source: TAIR

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein At2g39920
Gene namesi
Ordered Locus Names:At2g39920
ORF Names:T28M21.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G39920.
TAIRilocus:2061201. AT2G39920.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei41 – 61HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002712861 – 283Uncharacterized protein At2g39920Add BLAST283

Proteomic databases

PaxDbiO04195.

PTM databases

iPTMnetiO04195.

Expressioni

Gene expression databases

ExpressionAtlasiO04195. baseline and differential.
GenevisibleiO04195. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G39920.1.

Structurei

3D structure databases

ProteinModelPortaliO04195.
SMRiO04195.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the APS1/VSP family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IXNX. Eukaryota.
ENOG411181T. LUCA.
HOGENOMiHOG000155209.
InParanoidiO04195.
OMAiNWQSKRL.
OrthoDBiEOG09360NKH.
PhylomeDBiO04195.

Family and domain databases

Gene3Di3.40.50.1000. 1 hit.
InterProiView protein in InterPro
IPR005519. Acid_phosphat_B-like.
IPR023214. HAD-like_dom.
PfamiView protein in Pfam
PF03767. Acid_phosphat_B. 1 hit.

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: O04195-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSAYTHPMER ELSGLSSRGN SELGSRYSIE SGCYMTSLAA SIFIASLVTF
60 70 80 90 100
GVLMITLLIA LSTMLQSCEN RNIAIVEAQR LDESFGYCKI LSLHSQLNSL
110 120 130 140 150
DEESELPLLC RDVALHRIKQ GIYLRELNFT IQMALTYFQT IKPMNDNCDV
160 170 180 190 200
VVIDIDDTNL LEQDSYYMKY IEEAKHQKSI LILALYSKLR SQGYSMVLLS
210 220 230 240 250
RRPETERNAT IEQLKSRGYS DWSHLIMSRE DTRQKEELER GHRVIGVIGN
260 270 280
HMDVLRGQWN WQSKRLFKLP SLTYDDVLDY NER
Length:283
Mass (Da):32,671
Last modified:June 1, 2002 - v2
Checksum:i5343C586399A3E32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF002109 Genomic DNA. Translation: AAB95277.2.
CP002685 Genomic DNA. Translation: AEC09749.1.
CP002685 Genomic DNA. Translation: AEC09751.1.
CP002685 Genomic DNA. Translation: ANM61390.1.
AY087290 mRNA. Translation: AAM64843.1.
BT025037 mRNA. Translation: ABE02412.1.
PIRiA84823.
RefSeqiNP_001189717.1. NM_001202788.1. [O04195-1]
NP_001323609.1. NM_001336806.1. [O04195-1]
NP_565918.1. NM_129550.4. [O04195-1]
UniGeneiAt.37118.
At.37119.

Genome annotation databases

EnsemblPlantsiAT2G39920.1; AT2G39920.1; AT2G39920. [O04195-1]
AT2G39920.3; AT2G39920.3; AT2G39920. [O04195-1]
AT2G39920.4; AT2G39920.4; AT2G39920. [O04195-1]
GeneIDi818579.
GrameneiAT2G39920.1; AT2G39920.1; AT2G39920.
AT2G39920.3; AT2G39920.3; AT2G39920.
AT2G39920.4; AT2G39920.4; AT2G39920.
KEGGiath:AT2G39920.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiY2992_ARATH
AccessioniPrimary (citable) accession number: O04195
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: June 1, 2002
Last modified: August 30, 2017
This is version 97 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families