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Protein

Ferredoxin, chloroplastic

Gene

PETF

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.By similarity

Cofactori

[2Fe-2S] clusterBy similarityNote: Binds 1 [2Fe-2S] cluster.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi89Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi94Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi97Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi127Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin, chloroplastic
Gene namesi
Name:PETF
ORF Names:PHYPADRAFT_190267, PHYPADRAFT_190462
OrganismiPhyscomitrella patens subsp. patens (Moss)
Taxonomic identifieri3218 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella
Proteomesi
  • UP000006727 Componenti: Partially assembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 48ChloroplastBy similarityAdd BLAST48
ChainiPRO_000000883749 – 145Ferredoxin, chloroplasticAdd BLAST97

Proteomic databases

PRIDEiO04166.

Interactioni

Subunit structurei

Forms a complex with heterodimeric ferredoxin-thioredoxin reductase (FTR) and thioredoxin.By similarity

Protein-protein interaction databases

STRINGi3218.PP1S146_120V6.1.

Structurei

3D structure databases

ProteinModelPortaliO04166.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini51 – 1432Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd BLAST93

Sequence similaritiesi

Belongs to the 2Fe2S plant-type ferredoxin family.Curated
Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410IYZG. Eukaryota.
COG0633. LUCA.
HOGENOMiHOG000217152.
KOiK02639.
OMAiHKEEAIM.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMiSSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR02008. fdx_plant. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O04166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAAMTSIV PVASIAPVSK VANVRPSSVS VAKAFGLKSR SMGRLTCMAT
60 70 80 90 100
YKVTFLDGET GAENVVECSD EEYVLDAAER AGMDLPYSCR AGACSSCAGI
110 120 130 140
IKAGEVDQSD QSFLDDSQID DGFVLTCVAY PASDCIILTH QEENM
Length:145
Mass (Da):15,217
Last modified:September 3, 2014 - v2
Checksum:iD37C7BE216629C82
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y12734 mRNA. Translation: CAA73265.1.
DS545032 Genomic DNA. Translation: EDQ63350.1.
DS545035 Genomic DNA. Translation: EDQ63083.1.
RefSeqiXP_001771921.1. XM_001771869.1.
XP_001772139.1. XM_001772087.1.
UniGeneiPpa.3073.

Genome annotation databases

EnsemblPlantsiPP1S143_176V6.1; PP1S143_176V6.1; PP1S143_176V6.
PP1S146_120V6.1; PP1S146_120V6.1; PP1S146_120V6.
GeneIDi5935117.
5935313.
GrameneiPP1S143_176V6.1; PP1S143_176V6.1; PP1S143_176V6.
PP1S146_120V6.1; PP1S146_120V6.1; PP1S146_120V6.
KEGGippp:PHYPADRAFT_190267.
ppp:PHYPADRAFT_190462.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y12734 mRNA. Translation: CAA73265.1.
DS545032 Genomic DNA. Translation: EDQ63350.1.
DS545035 Genomic DNA. Translation: EDQ63083.1.
RefSeqiXP_001771921.1. XM_001771869.1.
XP_001772139.1. XM_001772087.1.
UniGeneiPpa.3073.

3D structure databases

ProteinModelPortaliO04166.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3218.PP1S146_120V6.1.

Proteomic databases

PRIDEiO04166.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiPP1S143_176V6.1; PP1S143_176V6.1; PP1S143_176V6.
PP1S146_120V6.1; PP1S146_120V6.1; PP1S146_120V6.
GeneIDi5935117.
5935313.
GrameneiPP1S143_176V6.1; PP1S143_176V6.1; PP1S143_176V6.
PP1S146_120V6.1; PP1S146_120V6.1; PP1S146_120V6.
KEGGippp:PHYPADRAFT_190267.
ppp:PHYPADRAFT_190462.

Phylogenomic databases

eggNOGiENOG410IYZG. Eukaryota.
COG0633. LUCA.
HOGENOMiHOG000217152.
KOiK02639.
OMAiHKEEAIM.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMiSSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR02008. fdx_plant. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiFER_PHYPA
AccessioniPrimary (citable) accession number: O04166
Secondary accession number(s): A9SZY5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: September 3, 2014
Last modified: October 5, 2016
This is version 89 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.