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Protein

Ferredoxin-1, chloroplastic

Gene

FD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Cofactori

[2Fe-2S] clusterNote: Binds 1 [2Fe-2S] cluster.

Redox potential

E0 is -425 mV.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi91 – 911Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation
Metal bindingi96 – 961Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation
Metal bindingi99 – 991Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation
Metal bindingi129 – 1291Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

  • electron transport chain Source: InterPro
  • response to karrikin Source: TAIR
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-1, chloroplastic
Short name:
AtFd1
Gene namesi
Name:FD1
Synonyms:PETF2
Ordered Locus Names:At1g10960
ORF Names:T19D16.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G10960.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast stroma Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 5252ChloroplastAdd
BLAST
Chaini53 – 14896Ferredoxin-1, chloroplasticPRO_0000008826Add
BLAST

Proteomic databases

PaxDbiO04090.
PRIDEiO04090.

PTM databases

iPTMnetiO04090.

Expressioni

Tissue specificityi

Expressed in leaves. Not detected in roots.1 Publication

Gene expression databases

GenevisibleiO04090. AT.

Interactioni

Protein-protein interaction databases

BioGridi22879. 1 interaction.
IntActiO04090. 2 interactions.
STRINGi3702.AT1G10960.1.

Structurei

3D structure databases

ProteinModelPortaliO04090.
SMRiO04090. Positions 53-148.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini55 – 145912Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the 2Fe2S plant-type ferredoxin family.Curated
Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410IYGQ. Eukaryota.
COG0633. LUCA.
HOGENOMiHOG000217152.
InParanoidiO04090.
KOiK02639.
OMAiHKEEAIM.
OrthoDBiEOG09360RVH.
PhylomeDBiO04090.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMiSSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR02008. fdx_plant. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O04090-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTALSSAI VSTSFLRRQQ TPISLRSLPF ANTQSLFGLK SSTARGGRVT
60 70 80 90 100
AMATYKVKFI TPEGEQEVEC EEDVYVLDAA EEAGLDLPYS CRAGSCSSCA
110 120 130 140
GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM
Length:148
Mass (Da):15,897
Last modified:July 1, 1997 - v1
Checksum:i9B2809F103FADCEF
GO

Sequence cautioni

The sequence AAL24214 differs from that shown. Reason: Erroneous termination at position 119. Translated as Glu.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U95973 Genomic DNA. Translation: AAB65481.1.
CP002684 Genomic DNA. Translation: AEE28669.1.
AY058106 mRNA. Translation: AAL24214.1. Sequence problems.
AY127948 mRNA. Translation: AAM91047.1.
AY086012 mRNA. Translation: AAM63221.1.
PIRiE86243.
RefSeqiNP_172565.1. NM_100971.2.
UniGeneiAt.21590.
At.75115.

Genome annotation databases

EnsemblPlantsiAT1G10960.1; AT1G10960.1; AT1G10960.
GeneIDi837639.
GrameneiAT1G10960.1; AT1G10960.1; AT1G10960.
KEGGiath:AT1G10960.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U95973 Genomic DNA. Translation: AAB65481.1.
CP002684 Genomic DNA. Translation: AEE28669.1.
AY058106 mRNA. Translation: AAL24214.1. Sequence problems.
AY127948 mRNA. Translation: AAM91047.1.
AY086012 mRNA. Translation: AAM63221.1.
PIRiE86243.
RefSeqiNP_172565.1. NM_100971.2.
UniGeneiAt.21590.
At.75115.

3D structure databases

ProteinModelPortaliO04090.
SMRiO04090. Positions 53-148.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22879. 1 interaction.
IntActiO04090. 2 interactions.
STRINGi3702.AT1G10960.1.

PTM databases

iPTMnetiO04090.

Proteomic databases

PaxDbiO04090.
PRIDEiO04090.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G10960.1; AT1G10960.1; AT1G10960.
GeneIDi837639.
GrameneiAT1G10960.1; AT1G10960.1; AT1G10960.
KEGGiath:AT1G10960.

Organism-specific databases

TAIRiAT1G10960.

Phylogenomic databases

eggNOGiENOG410IYGQ. Eukaryota.
COG0633. LUCA.
HOGENOMiHOG000217152.
InParanoidiO04090.
KOiK02639.
OMAiHKEEAIM.
OrthoDBiEOG09360RVH.
PhylomeDBiO04090.

Miscellaneous databases

PROiO04090.

Gene expression databases

GenevisibleiO04090. AT.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR010241. Fd_pln.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
[Graphical view]
SUPFAMiSSF54292. SSF54292. 1 hit.
TIGRFAMsiTIGR02008. fdx_plant. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiFER1_ARATH
AccessioniPrimary (citable) accession number: O04090
Secondary accession number(s): Q93Z60
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 1, 1997
Last modified: September 7, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.