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Protein

Ferredoxin-1, chloroplastic

Gene

FD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Cofactori

[2Fe-2S] clusterNote: Binds 1 [2Fe-2S] cluster.

Redox potential

E0 is -425 mV.1 Publication

Manual assertion based on experiment ini

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi91Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi96Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi99Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi129Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

  • response to karrikin Source: TAIR

Keywordsi

Biological processElectron transport, Transport
Ligand2Fe-2S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-1, chloroplastic
Short name:
AtFd1
Gene namesi
Name:FD1
Synonyms:PETF2
Ordered Locus Names:At1g10960
ORF Names:T19D16.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G10960
TAIRilocus:2197349 AT1G10960

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 52ChloroplastAdd BLAST52
ChainiPRO_000000882653 – 148Ferredoxin-1, chloroplasticAdd BLAST96

Proteomic databases

PaxDbiO04090
PRIDEiO04090

PTM databases

iPTMnetiO04090

Expressioni

Tissue specificityi

Expressed in leaves. Not detected in roots.1 Publication

Gene expression databases

ExpressionAtlasiO04090 baseline and differential
GenevisibleiO04090 AT

Interactioni

Protein-protein interaction databases

BioGridi22879, 1 interactor
IntActiO04090, 2 interactors
STRINGi3702.AT1G10960.1

Structurei

3D structure databases

ProteinModelPortaliO04090
SMRiO04090
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini55 – 1452Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

Belongs to the 2Fe2S plant-type ferredoxin family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410IYGQ Eukaryota
COG0633 LUCA
HOGENOMiHOG000217152
InParanoidiO04090
KOiK02639
OMAiDDDQMNE
OrthoDBiEOG09360RVH
PhylomeDBiO04090

Family and domain databases

CDDicd00207 fer2, 1 hit
Gene3Di3.10.20.30, 1 hit
InterProiView protein in InterPro
IPR036010 2Fe-2S_ferredoxin-like_sf
IPR001041 2Fe-2S_ferredoxin-type
IPR006058 2Fe2S_fd_BS
IPR012675 Beta-grasp_dom_sf
IPR010241 Fd_pln
PfamiView protein in Pfam
PF00111 Fer2, 1 hit
SUPFAMiSSF54292 SSF54292, 1 hit
TIGRFAMsiTIGR02008 fdx_plant, 1 hit
PROSITEiView protein in PROSITE
PS00197 2FE2S_FER_1, 1 hit
PS51085 2FE2S_FER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O04090-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTALSSAI VSTSFLRRQQ TPISLRSLPF ANTQSLFGLK SSTARGGRVT
60 70 80 90 100
AMATYKVKFI TPEGEQEVEC EEDVYVLDAA EEAGLDLPYS CRAGSCSSCA
110 120 130 140
GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM
Length:148
Mass (Da):15,897
Last modified:July 1, 1997 - v1
Checksum:i9B2809F103FADCEF
GO

Sequence cautioni

The sequence AAL24214 differs from that shown. Reason: Erroneous termination at position 119. Translated as Glu.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U95973 Genomic DNA Translation: AAB65481.1
CP002684 Genomic DNA Translation: AEE28669.1
AY058106 mRNA Translation: AAL24214.1 Sequence problems.
AY127948 mRNA Translation: AAM91047.1
AY086012 mRNA Translation: AAM63221.1
PIRiE86243
RefSeqiNP_172565.1, NM_100971.3
UniGeneiAt.21590
At.75115

Genome annotation databases

EnsemblPlantsiAT1G10960.1; AT1G10960.1; AT1G10960
GeneIDi837639
GrameneiAT1G10960.1; AT1G10960.1; AT1G10960
KEGGiath:AT1G10960

Similar proteinsi

Entry informationi

Entry nameiFER1_ARATH
AccessioniPrimary (citable) accession number: O04090
Secondary accession number(s): Q93Z60
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 1, 1997
Last modified: April 25, 2018
This is version 134 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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