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Protein

Serine carboxypeptidase-like 31

Gene

SCPL31

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable carboxypeptidase.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei198 – 1981PROSITE-ProRule annotation
Active sitei413 – 4131PROSITE-ProRule annotation
Active sitei465 – 4651PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Carboxypeptidase, Hydrolase, Protease

Enzyme and pathway databases

BioCyciARA:AT1G11080-MONOMER.
ARA:GQT-2633-MONOMER.

Protein family/group databases

ESTHERiarath-SCP31. Carboxypeptidase_S10.
MEROPSiS10.A36.

Names & Taxonomyi

Protein namesi
Recommended name:
Serine carboxypeptidase-like 31 (EC:3.4.16.-)
Gene namesi
Name:SCPL31
Ordered Locus Names:At1g11080
ORF Names:T19D16.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G11080.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3030Sequence analysisAdd
BLAST
Chaini31 – 492462Serine carboxypeptidase-like 31PRO_0000274646Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi105 ↔ 376By similarity
Glycosylationi156 – 1561N-linked (GlcNAc...)Sequence analysis
Glycosylationi221 – 2211N-linked (GlcNAc...)Sequence analysis
Disulfide bondi270 ↔ 283By similarity
Glycosylationi271 – 2711N-linked (GlcNAc...)Sequence analysis
Disulfide bondi307 ↔ 344By similarity
Glycosylationi372 – 3721N-linked (GlcNAc...)Sequence analysis
Glycosylationi383 – 3831N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiO04084.
PRIDEiO04084.

Expressioni

Tissue specificityi

Expressed in roots, senescent leaves, stems, flowers and siliques.1 Publication

Gene expression databases

ExpressionAtlasiO04084. baseline and differential.
GenevisibleiO04084. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G11080.2.

Structurei

3D structure databases

ProteinModelPortaliO04084.
SMRiO04084. Positions 45-489.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi487 – 4904Poly-Pro

Sequence similaritiesi

Belongs to the peptidase S10 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiKOG1282. Eukaryota.
COG2939. LUCA.
HOGENOMiHOG000198295.
InParanoidiO04084.
KOiK16297.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR001563. Peptidase_S10.
IPR018202. Ser_caboxypep_ser_AS.
[Graphical view]
PANTHERiPTHR11802. PTHR11802. 1 hit.
PfamiPF00450. Peptidase_S10. 1 hit.
[Graphical view]
PRINTSiPR00724. CRBOXYPTASEC.
SUPFAMiSSF53474. SSF53474. 1 hit.
PROSITEiPS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: O04084-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDNYQTKNIS NLLTSLCFTT LLILAPVVIC TRQHRFDSPK RSLLANEQDL
60 70 80 90 100
VTGLPGQPDV SFRHYAGYVP VDESNGRAMF YWFFEAMDLP KEKPLVLWLN
110 120 130 140 150
GGPGCSSVGY GATQEIGPFL VDTNGNGLNF NPYAWNKEAN MLFLESPVGV
160 170 180 190 200
GFSYSNTSSD YQKLGDDFTA RDAYTFLCNW FEKFPEHKEN TFYIAGESYA
210 220 230 240 250
GKYVPELAEV VYDNNNNNKK NGSSFHINLK GILLGNPETS DAEDWRGWVD
260 270 280 290 300
YAWSHAVISD ETHRIITRTC NFSSDNTWSN DECNEAVAEV LKQYHEIDIY
310 320 330 340 350
SIYTSVCIGD SARSSYFDSA QFKTNSRISS KRMPPRLMGG YDPCLDDYAR
360 370 380 390 400
VFYNRADVQK SLHASDGVNL KNWSICNMEI FNNWTGSNPS VLPIYEKLIA
410 420 430 440 450
GGLRIWVYSG DTDGRVPVLA TRYSLNALEL PIKTAWRPWY HEKQVSGWLQ
460 470 480 490
EYEGLTFATF RGAGHAVPCF KPSSSLAFFS AFLSGVPPPP SR
Length:492
Mass (Da):55,445
Last modified:May 31, 2011 - v2
Checksum:iCA7D667A11DF00E6
GO

Sequence cautioni

The sequence AAB65475.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BT003972 differs from that shown. Reason: Frameshift at position 79. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti224 – 2241S → P in BT003972 (PubMed:14593172).Curated
Sequence conflicti237 – 2371P → H in BT003972 (PubMed:14593172).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U95973 Genomic DNA. Translation: AAB65475.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28680.1.
BT003972 mRNA. No translation available.
BT030381 mRNA. Translation: ABO38794.1.
PIRiG86244.
RefSeqiNP_172575.2. NM_100981.3. [O04084-1]
UniGeneiAt.27495.

Genome annotation databases

EnsemblPlantsiAT1G11080.1; AT1G11080.1; AT1G11080. [O04084-1]
GeneIDi837649.
KEGGiath:AT1G11080.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U95973 Genomic DNA. Translation: AAB65475.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28680.1.
BT003972 mRNA. No translation available.
BT030381 mRNA. Translation: ABO38794.1.
PIRiG86244.
RefSeqiNP_172575.2. NM_100981.3. [O04084-1]
UniGeneiAt.27495.

3D structure databases

ProteinModelPortaliO04084.
SMRiO04084. Positions 45-489.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G11080.2.

Protein family/group databases

ESTHERiarath-SCP31. Carboxypeptidase_S10.
MEROPSiS10.A36.

Proteomic databases

PaxDbiO04084.
PRIDEiO04084.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G11080.1; AT1G11080.1; AT1G11080. [O04084-1]
GeneIDi837649.
KEGGiath:AT1G11080.

Organism-specific databases

TAIRiAT1G11080.

Phylogenomic databases

eggNOGiKOG1282. Eukaryota.
COG2939. LUCA.
HOGENOMiHOG000198295.
InParanoidiO04084.
KOiK16297.

Enzyme and pathway databases

BioCyciARA:AT1G11080-MONOMER.
ARA:GQT-2633-MONOMER.

Miscellaneous databases

PROiO04084.

Gene expression databases

ExpressionAtlasiO04084. baseline and differential.
GenevisibleiO04084. AT.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR001563. Peptidase_S10.
IPR018202. Ser_caboxypep_ser_AS.
[Graphical view]
PANTHERiPTHR11802. PTHR11802. 1 hit.
PfamiPF00450. Peptidase_S10. 1 hit.
[Graphical view]
PRINTSiPR00724. CRBOXYPTASEC.
SUPFAMiSSF53474. SSF53474. 1 hit.
PROSITEiPS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Arabidopsis ORF clones."
    Bautista V.R., Kim C.J., Chen H., Wu S.Y., De Los Reyes C., Ecker J.R.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family."
    Fraser C.M., Rider L.W., Chapple C.
    Plant Physiol. 138:1136-1148(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY, NOMENCLATURE.

Entry informationi

Entry nameiSCP31_ARATH
AccessioniPrimary (citable) accession number: O04084
Secondary accession number(s): A4FVT3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: May 31, 2011
Last modified: July 6, 2016
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.