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Protein

rRNA N-glycosidase

Gene
N/A
Organism
Sambucus nigra (European elder)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Endohydrolysis of the N-glycosidic bond at one specific adenosine on the 28S rRNA.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseUniRule annotationSAAS annotation, Protein synthesis inhibitorUniRule annotationSAAS annotation, ToxinUniRule annotationSAAS annotation

Keywords - Biological processi

Plant defenseUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
rRNA N-glycosidaseUniRule annotation (EC:3.2.2.22UniRule annotation)
OrganismiSambucus nigra (European elder)Imported
Taxonomic identifieri4202 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsDipsacalesAdoxaceaeSambucus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25Sequence analysisAdd BLAST25
ChainiPRO_500415688526 – 565rRNA N-glycosidaseSequence analysisAdd BLAST540

Structurei

3D structure databases

ProteinModelPortaliO04071.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini312 – 437Ricin B-type lectinInterPro annotationAdd BLAST126
Domaini439 – 561Ricin B-type lectinInterPro annotationAdd BLAST123

Sequence similaritiesi

Belongs to the ribosome-inactivating protein family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di3.40.420.10. 1 hit.
4.10.470.10. 1 hit.
InterProiIPR001574. Ribosome_inactivat_prot.
IPR017988. Ribosome_inactivat_prot_CS.
IPR016138. Ribosome_inactivat_prot_sub1.
IPR016139. Ribosome_inactivat_prot_sub2.
IPR017989. Ribosome_inactivat_prot_subgr.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF00652. Ricin_B_lectin. 2 hits.
PF00161. RIP. 1 hit.
[Graphical view]
PRINTSiPR00396. SHIGARICIN.
SMARTiSM00458. RICIN. 2 hits.
[Graphical view]
SUPFAMiSSF50370. SSF50370. 2 hits.
SSF56371. SSF56371. 1 hit.
PROSITEiPS50231. RICIN_B_LECTIN. 2 hits.
PS00275. SHIGA_RICIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O04071-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLVATILYL VVFAICGLGI HGAAAAPPNY PSVSLKMAGA KWISYRNFLG
60 70 80 90 100
ELQDLVTRKS YTSLDLPVLK PQVPVENRFV LARLTNPSGD TVTLAIDVVN
110 120 130 140 150
LYVVAFSANG RSYFFKESTD IEKKNLFVDT KQENLKFTGN YNSLEQQAGD
160 170 180 190 200
RRESIPLGPN SLAQAISSLS RYSGGDAKSL AKALLVVIQM VSEAARFRYI
210 220 230 240 250
ELRIWTSVTD AIDFTPDPLM LSMENKWSYM SKEIQGATVG GTFAHVVQLQ
260 270 280 290 300
DQGNNPINVT NFRRLFQLTY IAVLLYGCAP VTSTSYSNNA IAAQIIRMPV
310 320 330 340 350
FRVGDDEKCT VVDVTRRISG RDGLCVDVRD GLAKDGNPVQ LLSCGQQSSQ
360 370 380 390 400
QWTFRTDGTI RSLGKCLTNS GDSSGNYAMI YNCDTAIRDA TKWVLSIDGT
410 420 430 440 450
ITHRLSGLVL TAPQAAQGTT LLLQKNIHAA SQGWIVGNVV PLVTFIVGYN
460 470 480 490 500
QMCLRANTQN NPLWLEDCVL NRREQMWALY GDGTIRVNSD RSLCVSHSSS
510 520 530 540 550
DLIIILKCQG SSNQRWVFNT NGTISNPNAK LVMEVRQSDV SLRQIIIYHP
560
TGNLNQQWIT DTDPV
Length:565
Mass (Da):62,348
Last modified:July 1, 1997 - v1
Checksum:iCD7744CC02593A26
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58357 mRNA. Translation: AAC49672.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U58357 mRNA. Translation: AAC49672.1.

3D structure databases

ProteinModelPortaliO04071.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.40.420.10. 1 hit.
4.10.470.10. 1 hit.
InterProiIPR001574. Ribosome_inactivat_prot.
IPR017988. Ribosome_inactivat_prot_CS.
IPR016138. Ribosome_inactivat_prot_sub1.
IPR016139. Ribosome_inactivat_prot_sub2.
IPR017989. Ribosome_inactivat_prot_subgr.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF00652. Ricin_B_lectin. 2 hits.
PF00161. RIP. 1 hit.
[Graphical view]
PRINTSiPR00396. SHIGARICIN.
SMARTiSM00458. RICIN. 2 hits.
[Graphical view]
SUPFAMiSSF50370. SSF50370. 2 hits.
SSF56371. SSF56371. 1 hit.
PROSITEiPS50231. RICIN_B_LECTIN. 2 hits.
PS00275. SHIGA_RICIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO04071_SAMNI
AccessioniPrimary (citable) accession number: O04071
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: October 5, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.