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Protein

60S ribosomal protein L19

Gene

rpl-19

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L19
Gene namesi
Name:rpl-19
ORF Names:C09D4.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC09D4.5; CE08034; WBGene00004431; rpl-19.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19819860S ribosomal protein L19PRO_0000131176Add
BLAST

Proteomic databases

EPDiO02639.
PaxDbiO02639.
PRIDEiO02639.

PTM databases

iPTMnetiO02639.

Interactioni

Protein-protein interaction databases

BioGridi37659. 5 interactions.
DIPiDIP-25603N.
IntActiO02639. 3 interactions.
MINTiMINT-212412.
STRINGi6239.C09D4.5.1.

Structurei

3D structure databases

ProteinModelPortaliO02639.
SMRiO02639. Positions 1-142.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L19e family.Curated

Phylogenomic databases

eggNOGiKOG1696. Eukaryota.
COG2147. LUCA.
GeneTreeiENSGT00390000012628.
HOGENOMiHOG000231277.
InParanoidiO02639.
KOiK02885.
OMAiEHIIQAK.
OrthoDBiEOG75B86V.
PhylomeDBiO02639.

Family and domain databases

Gene3Di1.10.1200.60. 1 hit.
1.10.1650.10. 1 hit.
HAMAPiMF_01475. Ribosomal_L19e.
InterProiIPR027547. Ribosomal_L19/L19e.
IPR023638. Ribosomal_L19/L19e_CS.
IPR000196. Ribosomal_L19/L19e_dom.
IPR015972. Ribosomal_L19/L19e_dom1.
IPR015974. Ribosomal_L19/L19e_dom3.
[Graphical view]
PfamiPF01280. Ribosomal_L19e. 1 hit.
[Graphical view]
SMARTiSM01416. Ribosomal_L19e. 1 hit.
[Graphical view]
SUPFAMiSSF48140. SSF48140. 1 hit.
PROSITEiPS00526. RIBOSOMAL_L19E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O02639-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNLRLQKRL ASAVLKCGKH RVWLDPNEVS EISGANSRQS IRRLVNDGLI
60 70 80 90 100
IRKPVTVHSR FRAREYEEAR RKGRHTGYGK RRGTANARMP EKTLWIRRMR
110 120 130 140 150
VLRNLLRRYR DAKKLDKHLY HELYLRAKGN NFKNKKNLIE YIFKKKTENK
160 170 180 190
RAKQLADQAQ ARRDKNKESR KRREERQVVK RAELLRKISQ SEKVIAGK
Length:198
Mass (Da):23,652
Last modified:July 1, 1997 - v1
Checksum:i03876B70136D0479
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080461 Genomic DNA. Translation: CCD63892.1.
PIRiT29135.
RefSeqiNP_491608.1. NM_059207.5.
UniGeneiCel.6672.

Genome annotation databases

EnsemblMetazoaiC09D4.5.1; C09D4.5.1; WBGene00004431.
C09D4.5.2; C09D4.5.2; WBGene00004431.
C09D4.5.3; C09D4.5.3; WBGene00004431.
C09D4.5.4; C09D4.5.4; WBGene00004431.
GeneIDi172201.
KEGGicel:CELE_C09D4.5.
UCSCiC09D4.5.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080461 Genomic DNA. Translation: CCD63892.1.
PIRiT29135.
RefSeqiNP_491608.1. NM_059207.5.
UniGeneiCel.6672.

3D structure databases

ProteinModelPortaliO02639.
SMRiO02639. Positions 1-142.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi37659. 5 interactions.
DIPiDIP-25603N.
IntActiO02639. 3 interactions.
MINTiMINT-212412.
STRINGi6239.C09D4.5.1.

PTM databases

iPTMnetiO02639.

Proteomic databases

EPDiO02639.
PaxDbiO02639.
PRIDEiO02639.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC09D4.5.1; C09D4.5.1; WBGene00004431.
C09D4.5.2; C09D4.5.2; WBGene00004431.
C09D4.5.3; C09D4.5.3; WBGene00004431.
C09D4.5.4; C09D4.5.4; WBGene00004431.
GeneIDi172201.
KEGGicel:CELE_C09D4.5.
UCSCiC09D4.5.1. c. elegans.

Organism-specific databases

CTDi172201.
WormBaseiC09D4.5; CE08034; WBGene00004431; rpl-19.

Phylogenomic databases

eggNOGiKOG1696. Eukaryota.
COG2147. LUCA.
GeneTreeiENSGT00390000012628.
HOGENOMiHOG000231277.
InParanoidiO02639.
KOiK02885.
OMAiEHIIQAK.
OrthoDBiEOG75B86V.
PhylomeDBiO02639.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi874463.
PROiO02639.

Family and domain databases

Gene3Di1.10.1200.60. 1 hit.
1.10.1650.10. 1 hit.
HAMAPiMF_01475. Ribosomal_L19e.
InterProiIPR027547. Ribosomal_L19/L19e.
IPR023638. Ribosomal_L19/L19e_CS.
IPR000196. Ribosomal_L19/L19e_dom.
IPR015972. Ribosomal_L19/L19e_dom1.
IPR015974. Ribosomal_L19/L19e_dom3.
[Graphical view]
PfamiPF01280. Ribosomal_L19e. 1 hit.
[Graphical view]
SMARTiSM01416. Ribosomal_L19e. 1 hit.
[Graphical view]
SUPFAMiSSF48140. SSF48140. 1 hit.
PROSITEiPS00526. RIBOSOMAL_L19E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRL19_CAEEL
AccessioniPrimary (citable) accession number: O02639
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 1, 1997
Last modified: May 11, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.