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Protein
Submitted name:

LSY-2-Like

Gene

lsl-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
LSY-2-LikeImported
Gene namesi
Name:lsl-1Imported
ORF Names:CELE_F52F12.4Imported, F52F12.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF52F12.4; CE36164; WBGene00009937; lsl-1.

PTM / Processingi

Proteomic databases

EPDiO02273.
PaxDbiO02273.

Expressioni

Gene expression databases

BgeeiWBGene00009937.

Interactioni

Protein-protein interaction databases

IntActiO02273. 32 interactors.
STRINGi6239.F52F12.4.

Structurei

3D structure databases

ProteinModelPortaliO02273.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini37 – 64C2H2-typeInterPro annotationAdd BLAST28
Domaini65 – 92C2H2-typeInterPro annotationAdd BLAST28
Domaini93 – 120C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00880000138489.
HOGENOMiHOG000017415.
InParanoidiO02273.
OMAiMNYKGLQ.
OrthoDBiEOG091G0HQP.
PhylomeDBiO02273.

Family and domain databases

Gene3Di3.30.40.10. 3 hits.
InterProiView protein in InterPro
IPR013087. Znf_C2H2_type.
IPR013083. Znf_RING/FYVE/PHD.
SMARTiView protein in SMART
SM00355. ZnF_C2H2. 5 hits.
SUPFAMiSSF57667. SSF57667. 2 hits.
PROSITEiView protein in PROSITE
PS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.

Sequencei

Sequence statusi: Complete.

O02273-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIIDDRTDP SYDGEDYEAS ITFGTYQQEE VAPFAVHQCN VCNKMFMNYK
60 70 80 90 100
GLQQHSVIHT DTKPYICDVC GRGFRYKSNM FEHRTVHTGY TPYVCPFCGK
110 120 130 140 150
QFRLKGNMKK HMRTHVTSKE ELEAAYRPYS SNRRSSGIIP SDALVIRGTS
160 170 180 190 200
MPYYNPEKKR SVPKLLLGKD PSKWVDMICR NQLIPLSSFD DKIMRATMRL
210 220 230 240 250
TNCHMASDVL EQAKPLEFEI FRCPICKCEC SGREDCQLHM YASHDKKEAE
260 270 280 290 300
EPNYCTKCMR VFADVDMYRQ HQSYHSRVQL MIRNNELEMG SPEVDISQIC
310
YSMITNTENE MNILKPSA
Length:318
Mass (Da):36,904
Last modified:July 5, 2004 - v2
Checksum:iD9D6C70C59CE9A3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB05735.2.
PIRiT22512.
RefSeqiNP_492621.2. NM_060220.4.
UniGeneiCel.18657.

Genome annotation databases

EnsemblMetazoaiF52F12.4; F52F12.4; WBGene00009937.
GeneIDi172844.
KEGGicel:CELE_F52F12.4.
UCSCiF52F12.4. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiO02273_CAEEL
AccessioniPrimary (citable) accession number: O02273
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 5, 2004
Last modified: June 7, 2017
This is version 141 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported