Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

LSY-2-Like

Gene

lsl-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
LSY-2-LikeImported
Gene namesi
Name:lsl-1Imported
ORF Names:CELE_F52F12.4Imported, F52F12.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF52F12.4; CE36164; WBGene00009937; lsl-1.

PTM / Processingi

Proteomic databases

EPDiO02273.
PaxDbiO02273.
PRIDEiO02273.

Interactioni

Protein-protein interaction databases

IntActiO02273. 32 interactions.
STRINGi6239.F52F12.4.

Structurei

3D structure databases

ProteinModelPortaliO02273.
SMRiO02273. Positions 24-119, 243-278.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini37 – 6428C2H2-typeInterPro annotationAdd
BLAST
Domaini65 – 9228C2H2-typeInterPro annotationAdd
BLAST
Domaini93 – 12028C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00840000130367.
HOGENOMiHOG000017415.
InParanoidiO02273.
OMAiMNYKGLQ.
OrthoDBiEOG7KM5S9.
PhylomeDBiO02273.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 1 hit.
PF13912. zf-C2H2_6. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O02273-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIIDDRTDP SYDGEDYEAS ITFGTYQQEE VAPFAVHQCN VCNKMFMNYK
60 70 80 90 100
GLQQHSVIHT DTKPYICDVC GRGFRYKSNM FEHRTVHTGY TPYVCPFCGK
110 120 130 140 150
QFRLKGNMKK HMRTHVTSKE ELEAAYRPYS SNRRSSGIIP SDALVIRGTS
160 170 180 190 200
MPYYNPEKKR SVPKLLLGKD PSKWVDMICR NQLIPLSSFD DKIMRATMRL
210 220 230 240 250
TNCHMASDVL EQAKPLEFEI FRCPICKCEC SGREDCQLHM YASHDKKEAE
260 270 280 290 300
EPNYCTKCMR VFADVDMYRQ HQSYHSRVQL MIRNNELEMG SPEVDISQIC
310
YSMITNTENE MNILKPSA
Length:318
Mass (Da):36,904
Last modified:July 5, 2004 - v2
Checksum:iD9D6C70C59CE9A3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB05735.2.
PIRiT22512.
RefSeqiNP_492621.2. NM_060220.4.
UniGeneiCel.18657.

Genome annotation databases

EnsemblMetazoaiF52F12.4; F52F12.4; WBGene00009937.
GeneIDi172844.
KEGGicel:CELE_F52F12.4.
UCSCiF52F12.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAB05735.2.
PIRiT22512.
RefSeqiNP_492621.2. NM_060220.4.
UniGeneiCel.18657.

3D structure databases

ProteinModelPortaliO02273.
SMRiO02273. Positions 24-119, 243-278.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO02273. 32 interactions.
STRINGi6239.F52F12.4.

Proteomic databases

EPDiO02273.
PaxDbiO02273.
PRIDEiO02273.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF52F12.4; F52F12.4; WBGene00009937.
GeneIDi172844.
KEGGicel:CELE_F52F12.4.
UCSCiF52F12.4. c. elegans.

Organism-specific databases

CTDi172844.
WormBaseiF52F12.4; CE36164; WBGene00009937; lsl-1.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00840000130367.
HOGENOMiHOG000017415.
InParanoidiO02273.
OMAiMNYKGLQ.
OrthoDBiEOG7KM5S9.
PhylomeDBiO02273.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 1 hit.
PF13912. zf-C2H2_6. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 5 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO02273_CAEEL
AccessioniPrimary (citable) accession number: O02273
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 5, 2004
Last modified: June 8, 2016
This is version 133 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.