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Protein
Submitted name:

Small Nuclear RibonucleoProtein homolog

Gene

snrp-40.2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.
SignaLinkiO02097.

Names & Taxonomyi

Protein namesi
Submitted name:
Small Nuclear RibonucleoProtein homologImported
Gene namesi
Name:snrp-40.2Imported
ORF Names:C18E3.5Imported, CELE_C18E3.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC18E3.5; CE27713; WBGene00015974; snrp-40.2.

Subcellular locationi

Keywords - Cellular componenti

Virion

PTM / Processingi

Proteomic databases

EPDiO02097.
PaxDbiO02097.
PeptideAtlasiO02097.

Expressioni

Gene expression databases

BgeeiWBGene00015974.

Interactioni

Protein-protein interaction databases

STRINGi6239.C18E3.5.1.

Structurei

3D structure databases

ProteinModelPortaliO02097.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini32 – 331WD_REPEATS_REGIONInterPro annotationAdd BLAST300
Repeati32 – 65WDPROSITE-ProRule annotationAdd BLAST34
Repeati75 – 116WDPROSITE-ProRule annotationAdd BLAST42
Repeati117 – 159WDPROSITE-ProRule annotationAdd BLAST43
Repeati167 – 200WDPROSITE-ProRule annotationAdd BLAST34
Repeati201 – 235WDPROSITE-ProRule annotationAdd BLAST35
Repeati263 – 292WDPROSITE-ProRule annotationAdd BLAST30
Repeati293 – 331WDPROSITE-ProRule annotationAdd BLAST39

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0265. Eukaryota.
ENOG410XSEW. LUCA.
GeneTreeiENSGT00810000125363.
HOGENOMiHOG000091644.
InParanoidiO02097.
KOiK12857.
OMAiFGECENF.
OrthoDBiEOG091G0DR4.
PhylomeDBiO02097.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiView protein in InterPro
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
PfamiView protein in Pfam
PF00400. WD40. 6 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 7 hits.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 3 hits.
PS50082. WD_REPEATS_2. 7 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

O02097-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMVIPARNQ MASQFLELPK RTSSLMAPTM VLQGHGGEIY TSQFSSDGSF
60 70 80 90 100
LASAGYDQQI FLWNVFGECE NFAVLKGHKG AIMEVKFNAD SSHLVSAGTD
110 120 130 140 150
KTVRVWDMET GSCIRNFKSH TDIVNSVDVN RRGPQMICSA SDDGTVMVHD
160 170 180 190 200
MRSKEAAKKF ICKYQQTAVT FNDAADNVIC GGIDNQIKVW DMLRNDVRYV
210 220 230 240 250
LSGHRDTITS LSVSHNGNFL LSNSMDCSLM SWDIRPFVPA QRLVARYQGA
260 270 280 290 300
SHNFEKNLLK CGWSPRDNYI TAGSADRFVY VWNAKSRACV YKLPGHLGSV
310 320 330
NCTALHPTQQ ILLSAGSDKT IFLGELDLED Y
Length:331
Mass (Da):36,752
Last modified:October 1, 2001 - v2
Checksum:i008981785FD37F0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD65140.1.
RefSeqiNP_491325.1. NM_058924.5.
UniGeneiCel.22443.

Genome annotation databases

EnsemblMetazoaiC18E3.5; C18E3.5; WBGene00015974.
GeneIDi172015.
KEGGicel:CELE_C18E3.5.
UCSCiC18E3.5. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiO02097_CAEEL
AccessioniPrimary (citable) accession number: O02097
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: October 1, 2001
Last modified: July 5, 2017
This is version 135 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported