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Protein

60S ribosomal protein L4

Gene

rpl-4

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • determination of adult lifespan Source: WormBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L4
Gene namesi
Name:rpl-4
ORF Names:B0041.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiB0041.4; CE07669; WBGene00004415; rpl-4.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001293582 – 34560S ribosomal protein L4Add BLAST344

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanine1 Publication1

Keywords - PTMi

Acetylation

Proteomic databases

EPDiO02056.
PaxDbiO02056.
PeptideAtlasiO02056.
PRIDEiO02056.

PTM databases

iPTMnetiO02056.

Expressioni

Gene expression databases

BgeeiWBGene00004415.

Interactioni

Protein-protein interaction databases

BioGridi37538. 9 interactors.
DIPiDIP-26846N.
IntActiO02056. 5 interactors.
MINTiMINT-1087026.
STRINGi6239.B0041.4.2.

Structurei

3D structure databases

ProteinModelPortaliO02056.
SMRiO02056.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1475. Eukaryota.
COG0088. LUCA.
GeneTreeiENSGT00390000018145.
HOGENOMiHOG000107331.
InParanoidiO02056.
KOiK02930.
OMAiGRGKMRN.
OrthoDBiEOG091G0A2I.
PhylomeDBiO02056.

Family and domain databases

Gene3Di3.40.1370.10. 1 hit.
InterProiView protein in InterPro
IPR025755. Ribos_L4_C_dom.
IPR002136. Ribosomal_L4/L1e.
IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
IPR023574. Ribosomal_L4_dom.
PfamiView protein in Pfam
PF14374. Ribos_L4_asso_C. 1 hit.
PF00573. Ribosomal_L4. 1 hit.
SUPFAMiSSF52166. SSF52166. 1 hit.
PROSITEiView protein in PROSITE
PS00939. RIBOSOMAL_L1E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O02056-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARPLVTVY DEKYEATQSQ IRLPAVFRTP IRPDLVSFIA DQVRRNRRQA
60 70 80 90 100
HAVNTKAGKQ HSAESWGTGR AVARIPRVRG GGTHRSGQGA FGNMCRGGHM
110 120 130 140 150
FAPLKVFRRW HRNVNIAQKR YAVSSAIAAS GIPALLQARG HVIDQVAEVP
160 170 180 190 200
LVVSDKVESF RKTKEAVVFL RRSHLWADIE KVYNSKRNRA GKGKLRNRQH
210 220 230 240 250
KQKLGPVVIY GQDAECARAF RNIPGVDVMN VERLNLLKLA PGGHLGRLII
260 270 280 290 300
WTESAFKKLD TIYGTTVANS SQLKKGWSVP LPIMANSDFS RIIRSEEVVK
310 320 330 340
AIRAPKKNPV LPKVHRNPLK KRTLLYKLNP YASILRKASK ANVKK
Length:345
Mass (Da):38,659
Last modified:January 23, 2007 - v3
Checksum:iC798B9DB0CED60AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080106 Genomic DNA. Translation: CCD61249.1.
PIRiT34031.
RefSeqiNP_491416.1. NM_059015.4.
UniGeneiCel.5071.

Genome annotation databases

EnsemblMetazoaiB0041.4; B0041.4; WBGene00004415.
GeneIDi172074.
KEGGicel:CELE_B0041.4.
UCSCiB0041.4.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL4_CAEEL
AccessioniPrimary (citable) accession number: O02056
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 23, 2007
Last modified: July 5, 2017
This is version 121 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families